Issues

• Calls to auto-completion should use the plugins cli rather than needing to support bash commands

  enhancement
  umccr/icav2-cli-plugins#299 · Filter by author alexiswl opened on Jan 29, 2025
  

• Wrap cli in our own 'icav2' binary to prevent needing to 'source' at the start of scripts

  enhancement
  umccr/icav2-cli-plugins#298 · Filter by author alexiswl opened on Jan 29, 2025
  

• Install script should download the icav2 binary

  enhancement
  umccr/icav2-cli-plugins#297 · Filter by author alexiswl opened on Jan 29, 2025
  

• Recreate all existing icav2 projectdata commands to support icav2:// syntax

  enhancement
  umccr/icav2-cli-plugins#296 · Filter by author alexiswl opened on Jan 29, 2025
  

• icav2 projectanalyses list-v2 needs a few extra columns

  enhancement
  umccr/icav2-cli-plugins#295 · Filter by author alexiswl opened on Dec 20, 2024
  

• icav2 projectdata s3-sync-* help page is ambiguous

  umccr/icav2-cli-plugins#294 · Filter by author alexiswl opened on Dec 20, 2024

• icav2 projectdata ls icav2://<project_id>/path/to/dir returns empty when in a different project context

  umccr/icav2-cli-plugins#293 · Filter by author alexiswl opened on Dec 20, 2024
  

• Add projectdata cp command

  enhancement
  umccr/icav2-cli-plugins#292 · Filter by author alexiswl opened on Dec 20, 2024
  

• Add projectdata mkdir command

  enhancement
  umccr/icav2-cli-plugins#291 · Filter by author alexiswl opened on Dec 20, 2024
  

• Don't show linked data in projectdata ls by default

  bug
  umccr/icav2-cli-plugins#290 · Filter by author alexiswl opened on Dec 19, 2024
  

• Add check for jq being >= 1.6

  bug
  umccr/icav2-cli-plugins#289 · Filter by author alexiswl opened on Dec 19, 2024
  

• cwltool magic step should now point to Workflow runner-0-executor-0

  umccr/icav2-cli-plugins#288 · Filter by author alexiswl opened on Dec 10, 2024
  

• Add icav2 projectdata sync function

  enhancement
  umccr/icav2-cli-plugins#287 · Filter by author alexiswl opened on Dec 10, 2024
  

• icav2 projectdata ls isn't case sensitive

  bug
  umccr/icav2-cli-plugins#286 · Filter by author alexiswl opened on Dec 6, 2024
  

• aws write script path doesn't place trailing slash on source directory

  bug
  umccr/icav2-cli-plugins#285 · Filter by author alexiswl opened on Dec 5, 2024
  

• add ICAV2_SERVER_URL to env var

  bug
  umccr/icav2-cli-plugins#284 · Filter by author alexiswl opened on Dec 4, 2024
  1

  

• Write script path fails when there's no s3 sync args presented

  umccr/icav2-cli-plugins#283 · Filter by author alexiswl opened on Nov 22, 2024

• ICAv2 Projectpipelines download fails

  bug
  umccr/icav2-cli-plugins#282 · Filter by author alexiswl opened on Nov 12, 2024
  

• Use SHELL_EXE=$(readlink -f /proc/$$/exe) over $SHELL in source script

  bug
  umccr/icav2-cli-plugins#281 · Filter by author alexiswl opened on Nov 2, 2024
  

• ProjectPipelines create-wes-template provides incorrect examples for cwltool overrides

  umccr/icav2-cli-plugins#275 · Filter by author alexiswl opened on Aug 2, 2024
  2

  

• Move to read-the-docs for documentation

  documentationenhancement
  umccr/icav2-cli-plugins#266 · Filter by author alexiswl opened on Mar 4, 2024
  

• Add new command projectdata copy-manifest

  enhancement
  umccr/icav2-cli-plugins#264 · Filter by author alexiswl opened on Jan 21, 2024
  

• "BROWSER" env var error for projectdata view

  bug
  umccr/icav2-cli-plugins#263 · Filter by author alexiswl opened on Jan 17, 2024
  

• Create a docker container through ghcr.io

  umccr/icav2-cli-plugins#262 · Filter by author alexiswl opened on Dec 17, 2023
  3

  

• Add development page

  documentation
  umccr/icav2-cli-plugins#261 · Filter by author alexiswl opened on Dec 15, 2023