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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 59 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 11 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 13 2

  4. orcabus orcabus Public

    OrcaBus is expanding to https://github.com/orcabus

    Python 5

  5. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 15 8

Repositories

Showing 10 of 141 repositories
  • orcahouse Public

    🐳 UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouse's past year of commit activity
    HCL 0 0 0 1 Updated Oct 29, 2026
  • orcavault Public

    OrcaVault - Comprehensive Data Warehouse for Pipeline Automation

    umccr/orcavault's past year of commit activity
    Shell 0 0 0 0 Updated Oct 29, 2026
  • orcasonar Public
    umccr/orcasonar's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 29, 2026
  • icav2-cli-plugins Public

    A set of additional subcommands for icav2

    umccr/icav2-cli-plugins's past year of commit activity
    Python 3 MIT 0 38 0 Updated Oct 29, 2026
  • cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    umccr/cwl-ica's past year of commit activity
    Common Workflow Language 13 MIT 2 12 0 Updated Oct 29, 2026
  • cwl-ica-cli Public

    The CLI used for creating/syncing CWL workflows from GitHub to ICAv1

    umccr/cwl-ica-cli's past year of commit activity
    Python 1 MIT 0 12 0 Updated Oct 29, 2026
  • wrapica Public

    A suite of secondary / tertiary functions for running ICA API calls

    umccr/wrapica's past year of commit activity
    Python 2 GPL-3.0 0 7 0 Updated Oct 29, 2026
  • docs-platform Public

    Infrastructure and tooling for the UMCCR internal documentation platform at docs.umccr.org.

    umccr/docs-platform's past year of commit activity
    TypeScript 0 0 0 0 Updated Oct 28, 2026
  • nf-ica Public

    Configurations and patches used to deploy nextflow pipelines onto ICAv2.

    umccr/nf-ica's past year of commit activity
    0 GPL-3.0 0 0 0 Updated Oct 28, 2026
  • nf-ica-cli Public

    CLI toolkit for orchestrating Nextflow pipeline deployments to Illumina Connected Analytics (ICA).

    umccr/nf-ica-cli's past year of commit activity
    0 GPL-3.0 0 0 1 Updated Oct 28, 2026
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