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Pull requests: loculus-project/loculus

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249 Open 4,663 Closed
249 Open 4,663 Closed
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Pull requests list

ci(backend): enable extra tests on manual dispatch backend related to the loculus backend component github_actions Pull requests that update GitHub Actions code
#7164 opened Aug 25, 2026 by corneliusroemer-agent Collaborator Loading…
9
test(backend): start the test infrastructure from a JUnit extension, not a launcher listener backend related to the loculus backend component
#7163 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
fix(website): Keep uploaded files in file mapping while other files are still uploading website Tasks related to the web application
#7162 opened Aug 25, 2026 by tombch Collaborator Loading…
3 tasks
4
test(backend): stop re-stubbing DateProvider while a released-data stream is in flight backend related to the loculus backend component
#7161 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
test(backend): report the real cause when the test environment fails to start backend related to the loculus backend component
#7157 opened Aug 25, 2026 by corneliusroemer-agent Collaborator Loading…
5
feat(website): add new rawReadsMetadata component and pass requiredWhen arg to website deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#7156 opened Aug 25, 2026 by anna-parker Contributor Loading…
1 of 3 tasks
1
11
fix(website): derive the file mapping instead of maintaining a copy of it preview Triggers a deployment to argocd website Tasks related to the web application
#7155 opened Aug 25, 2026 by corneliusroemer-agent Collaborator Loading…
2 of 3 tasks
6
ci(backend): make backend-test hangs diagnosable backend related to the loculus backend component
#7154 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
14
feat: explain how to get original data on bulk revision page preview Triggers a deployment to argocd website Tasks related to the web application
#7153 opened Aug 24, 2026 by theosanderson Member Loading…
14
Compress submission uploads with zstd in the browser preview Triggers a deployment to argocd website Tasks related to the web application
#7152 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
feat(deposition): add tests that ensure sqlAlchemy db table models do… deposition related to ENA/INSDC deposition
#7151 opened Aug 24, 2026 by anna-parker Contributor • Draft
2 of 3 tasks
8
chore(ci): make GitHub workflow job names unique and informative github_actions Pull requests that update GitHub Actions code
#7150 opened Aug 24, 2026 by corneliusroemer Contributor • Draft
fix(ingest): don't retry ingest jobs, submit in smaller batches, raise time limit deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline
#7146 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
4
chore(backend): silence Byte Buddy agent and Unsafe warnings in tests backend related to the loculus backend component review please PR waiting for final review
#7145 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
1
7
chore(backend): run tests with compact object headers, as production does backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure review please PR waiting for final review
#7144 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
5
chore(backend): migrate HTTP 422 title from UNPROCESSABLE_ENTITY to UNPROCESSABLE CONTENT (per RFC 9110) backend related to the loculus backend component preview Triggers a deployment to argocd review please PR waiting for final review
#7142 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
6
feat(backend): Generate db migrations from exposed table definitions backend related to the loculus backend component
#7141 opened Aug 24, 2026 by tombch Collaborator • Draft
3 tasks
test(backend): assert Exposed declarations match the migrated schema backend related to the loculus backend component
#7139 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
1
feat!(backend): prevent db state divergence between truth and code backend related to the loculus backend component update_db_schema
#7138 opened Aug 24, 2026 by anna-parker Contributor • Draft
2 of 3 tasks
1
14
fix(backend): discard processed data whose sequence entry was edited backend related to the loculus backend component
#7137 opened Aug 23, 2026 by corneliusroemer-agent Collaborator • Draft
1
12
doc(kb): add spooling investigation writeup
#7134 opened Aug 23, 2026 by clonder Contributor Loading…
2 of 3 tasks
6
perf(backend): claim and store preprocessing results one statement per batch backend related to the loculus backend component performance
#7133 opened Aug 21, 2026 by clonder Contributor Loading…
3 tasks done
12
feat(raw-reads-processing): update deacon index to mask high qualityPPX consensus sequence k-mers
#7127 opened Aug 21, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
1
13
fix(website): Fix applying file mappings for compressed metadata files website Tasks related to the web application
#7119 opened Aug 20, 2026 by tombch Collaborator • Draft
3 tasks
1
1
[Mirror] Kubernetes/securitycontexts deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#7117 opened Aug 19, 2026 by chaoran-chen Member Loading…
9
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