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chore(deps): depend on bbi-variant-annotation from PyPI and bump to 2026.3.1 #933

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chore(deps): depend on bbi-variant-annotation from PyPI and bump to 2026.3.1 #933

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71 changes: 33 additions & 38 deletions poetry.lock
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11 changes: 5 additions & 6 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"

[tool.poetry]
name = "mavedb"
version = "2026.3.0"
version = "2026.3.1"
description = "API for MaveDB, the database of Multiplexed Assays of Variant Effect."
license = "AGPL-3.0-only"
readme = "README.md"
Expand Down Expand Up @@ -65,7 +65,7 @@ starlette = { version = "^1.7.0", optional = true }
starlette-context = { version = "^0.3.6", optional = true }
slack-sdk = { version = "~3.21.3", optional = true }
uvicorn = { extras = ["standard"], version = "*", optional = true }
variant-annotation = { git = "https://github.com/bbi-lab/variant-annotation.git", tag = "v1.2.0-beta.1", optional = true }
bbi-variant-annotation = { version = "1.2.0b3", optional = true }
watchtower = { version = "~3.2.0", optional = true }
asyncclick = "^8.3.0.7"
filelock = "^3.29.0"
Expand Down Expand Up @@ -96,7 +96,7 @@ SQLAlchemy = { extras = ["mypy"], version = "~2.0.0" }


[tool.poetry.extras]
server = ["aiocache", "alembic", "alembic-utils", "arq", "authlib", "biocommons", "boto3", "cdot", "cryptography", "fastapi", "hgvs", "orcid", "psycopg2", "python-jose", "python-multipart", "pyathena", "requests", "starlette", "starlette-context", "slack-sdk", "uvicorn", "variant-annotation", "watchtower"]
server = ["aiocache", "alembic", "alembic-utils", "arq", "authlib", "biocommons", "boto3", "cdot", "cryptography", "fastapi", "hgvs", "orcid", "psycopg2", "python-jose", "python-multipart", "pyathena", "requests", "starlette", "starlette-context", "slack-sdk", "uvicorn", "bbi-variant-annotation", "watchtower"]


[tool.mypy]
Expand All @@ -107,9 +107,8 @@ plugins = [
]
mypy_path = "mypy_stubs"

# variant-annotation is a git-pinned dependency (not yet published to PyPI) that ships
# no py.typed marker. Treat it as untyped rather than maintaining drift-prone local
# stubs for an actively-developed internal library.
# bbi-variant-annotation (imported as variant_annotation) ships no py.typed marker. Treat it as
# untyped rather than maintaining drift-prone local stubs for an actively-developed internal library.
[[tool.mypy.overrides]]
module = "variant_annotation.*"
ignore_missing_imports = true
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2 changes: 1 addition & 1 deletion src/mavedb/__init__.py
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Expand Up @@ -6,7 +6,7 @@
logger = module_logging.getLogger(__name__)

__project__ = "mavedb-api"
__version__ = "2026.3.0"
__version__ = "2026.3.1"

logger.info(f"MaveDB {__version__}")

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