JEFworks Lab

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1. STdeconvolve STdeconvolve Public

   Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

   R 161 21

2. STalign STalign Public

   Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

   Python 115 27

3. CRAWDAD CRAWDAD Public

   Cell-type Relationship Analysis Workflow Done Across Distances

   R 42 7

4. SEraster SEraster Public

   Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis

   R 20 5

5. STcompare STcompare Public

   STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets

   R 13 2

6. STARIT STARIT Public

   Spatial Transcriptomics As Rasterized Tensors (STARIT)

   Jupyter Notebook 3