genetic-data

Self-hosted health data engine: lab reports, wearables and genetic files in one record, and an agent that cites its sources.

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

A package, and script, to perform imaging transcriptomics on a neuroimaging scan.

An Open Source Web Application for Genetic Data (SNPs) Data Crawling

A novel self-supervised feature extraction method using omics data is proposed which improves classification in most of the classifiers.

Developing guidelines for adding sequence data to OBIS

This is a pipeline for quality control and cleanup for genetic data. It can be tailored to fit whole genome, exome sequencing or SNP array

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)

🧬 Convert FoundationOne genomic reports to cBioPortal OncoPrinter format — visualize mutations, CNVs, and fusions

Reopsitory with raw data and code to analyse the relationship between environmental conditions and clonality in Lepidium draba.

Learn breeding principles by hands on!

Local-first 23andMe and DTC DNA raw data to VCF 4.2 converter with PySide6 GUI, GRCh37/GRCh38 detection, and dbSNP/FASTA REF lookup

biotec-line organization profile for local-first bioinformatics, VCF, genotype conversion, and research-use-only genetic variant tools

Project to analyze for potential clinical trends and create survival analysis plots based on specific genes for a type of liver cancer.

Detection of epistasis patterns using Stochastic Mutliple Markov Blanket-Ant Colony Optimization (SMMB-ACO) method and Variable Neighbor Search (VNS)

Implementation of Context Binning and Model Clustering for Compression of Genetic Data

AI-powered personalized medicine from your DNA — CPIC-grounded pharmacogenomics from raw 23andMe / AncestryDNA / PDF data.

Attempt on building a high-performance compression tool for genetic data