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Update json_writer's vector handling for consistency - #3427

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fix/3424-standardize-json-write-vector
Open

Update json_writer's vector handling for consistency#3427
WardBrian wants to merge 1 commit into
developfrom
fix/3424-standardize-json-write-vector

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Submission Checklist

  • Run unit tests: ./runTests.py src/test/unit
  • Run cpplint: make cpplint
  • Declare copyright holder and open-source license: see below

Summary

Closes #3424. These overloads had an inconsistent style which could have led to a couple out of bounds reads and some string mangling.

Intended Effect

How to Verify

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Copyright and Licensing

Please list the copyright holder for the work you are submitting (this will be you or your assignee, such as a university or company):
Simons Foundation

By submitting this pull request, the copyright holder is agreeing to license the submitted work under the following licenses:

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Name Old Result New Result Ratio Performance change( 1 - new / old )
stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan 8.29 8.41 0.99 -1.45% slower
stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan 2.21 2.25 0.98 -2.03% slower
stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan 0.06 0.06 0.98 -1.56% slower
stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan 4.69 4.79 0.98 -2.09% slower
stat_comp_benchmarks/benchmarks/garch/garch.stan 0.43 0.43 1.01 0.52% faster
stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan 2.7 2.71 1.0 -0.44% slower
stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan 0.25 0.25 1.01 0.59% faster
stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan 19.43 19.24 1.01 0.99% faster
stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan 0.03 0.03 1.05 4.66% faster
stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan 0.1 0.1 1.02 2.44% faster
stat_comp_benchmarks/benchmarks/sir/sir.stan 66.55 66.12 1.01 0.65% faster
stat_comp_benchmarks/benchmarks/arK/arK.stan 1.56 1.55 1.01 1.04% faster
stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan 0.01 0.01 0.99 -0.98% slower
stat_comp_benchmarks/benchmarks/arma/arma.stan 0.28 0.28 1.01 0.64% faster
performance.compilation 250.66 230.67 1.09 7.98% faster
Mean result: 1.0080636869187483

Jenkins Console Log
Jenkins Build Stages
Commit hash: e1ee0a7f31086a9e7cf83189e98c1a2c4a0a8136

Machine information
Distributor ID:	Ubuntu
Description:	Ubuntu 20.04.3 LTS
Release:	20.04
Codename:	focal

CPU:

Architecture:                            x86_64
CPU op-mode(s):                          32-bit, 64-bit
Byte Order:                              Little Endian
Address sizes:                           46 bits physical, 48 bits virtual
CPU(s):                                  80
On-line CPU(s) list:                     0-79
Thread(s) per core:                      2
Core(s) per socket:                      20
Socket(s):                               2
NUMA node(s):                            2
Vendor ID:                               GenuineIntel
CPU family:                              6
Model:                                   85
Model name:                              Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz
Stepping:                                7
CPU MHz:                                 1000.043
CPU max MHz:                             3900.0000
CPU min MHz:                             1000.0000
BogoMIPS:                                5000.00
Virtualization:                          VT-x
L1d cache:                               1.3 MiB
L1i cache:                               1.3 MiB
L2 cache:                                40 MiB
L3 cache:                                55 MiB
NUMA node0 CPU(s):                       0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78
NUMA node1 CPU(s):                       1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79
Vulnerability Gather data sampling:      Mitigation; Microcode
Vulnerability Indirect target selection: Mitigation; Aligned branch/return thunks
Vulnerability Itlb multihit:             KVM: Mitigation: Split huge pages
Vulnerability L1tf:                      Not affected
Vulnerability Mds:                       Not affected
Vulnerability Meltdown:                  Not affected
Vulnerability Mmio stale data:           Mitigation; Clear CPU buffers; SMT vulnerable
Vulnerability Reg file data sampling:    Not affected
Vulnerability Retbleed:                  Mitigation; Enhanced IBRS
Vulnerability Spec rstack overflow:      Not affected
Vulnerability Spec store bypass:         Mitigation; Speculative Store Bypass disabled via prctl
Vulnerability Spectre v1:                Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:                Mitigation; Enhanced / Automatic IBRS; IBPB conditional; PBRSB-eIBRS SW sequence; BHI SW loop, KVM SW loop
Vulnerability Srbds:                     Not affected
Vulnerability Tsa:                       Not affected
Vulnerability Tsx async abort:           Mitigation; TSX disabled
Vulnerability Vmscape:                   Mitigation; IBPB before exit to userspace
Flags:                                   fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 intel_ppin ssbd mba ibrs ibpb stibp ibrs_enhanced tpr_shadow flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req vnmi pku ospke avx512_vnni md_clear flush_l1d arch_capabilities

G++:

g++ (Ubuntu 9.4.0-1ubuntu1~20.04) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Clang:

clang version 10.0.0-4ubuntu1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/bin

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json_writer emits invalid JSON for string vectors (elements unquoted, last element unescaped)

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