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Postdoctoral researcher at UNAM working on microbial evolution, comparative genomics, and hydrocarbon biodegradation. |
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Adaptive laboratory evolution of a petroleum-degrading bacterium under extreme pyrene selection followed by hybrid genome assembly, comparative genomics, and mutation analysis.
- Unicycler hybrid assembly
- Medaka polishing
- Polypolish polishing
- Assembly QC
- breseq workflow
- SNP calling using BWA, Samtools and BCFtools
- RNAfold analysis of non-coding mutations
- Plasmid comparison workflows
- MUMmer alignments
- Python
- R
- Linux
- Git/GitHub
- Genome assembly (Unicycler, Medaka, Polypolish)
- Comparative genomics
- Variant calling (breseq, BCFtools)
- RNA secondary structure analysis (RNAfold)
- Comparative genomics
- Adaptive laboratory evolution
- Bioinformatics
- Hydrocarbon biodegradation
- Microbial physiology
- Comparative genomics of evolved strains
- Genome assembly and polishing workflows
- Journal of Fungi (2023) – DOI: 10.3390/jof9090939
- Brazilian Journal of Microbiology (2020) – DOI: 10.1007/s42770-020-00329-7
