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norm: set --old-rec-tag and count REF-only trims as realigned - #2612

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davmlaw wants to merge 1 commit into
samtools:developfrom
davmlaw:norm-ref-only-trim-2391
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davmlaw wants to merge 1 commit into
samtools:developfrom
davmlaw:norm-ref-only-trim-2391

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@davmlaw davmlaw commented Oct 26, 2026 •

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Resolves #2391.

Problem was REF only trim path returned w/o setting tag or counting.

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davmlaw marked this pull request as ready for review October 26, 2026 08:10

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norm normalizing reference ALT is not counted in stats or old-rec-tag

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