Repositories list

• crcshotgun2

  Public
  Shotgun Sequencing Analysis of the Gut Microbiome in Colorectal Cancer Patients

  HTML

  •

  MIT License

  •00 forks in omicscodeathon/crcshotgun2•11 star in omicscodeathon/crcshotgun2•00 issues in omicscodeathon/crcshotgun2•00 pull requests in omicscodeathon/crcshotgun2•Updated Nov 8, 2026Nov 8, 2026

• cancerag

  Public
  In-silico Exploration of Biased Agonists for Targeting High-yield Cancer Pathways

  Python

  •

  MIT License

  •22 forks in omicscodeathon/cancerag•00 stars in omicscodeathon/cancerag•00 issues in omicscodeathon/cancerag•00 pull requests in omicscodeathon/cancerag•Updated Oct 25, 2026Oct 25, 2026

• afriprst2d

  Public
  Ancestry mismatches in discovery-GWAS and LD-reference compromise African-centric polygenic risk scores

  Jupyter Notebook

  •

  MIT License

  •00 forks in omicscodeathon/afriprst2d•11 star in omicscodeathon/afriprst2d•00 issues in omicscodeathon/afriprst2d•00 pull requests in omicscodeathon/afriprst2d•Updated Oct 19, 2026Oct 19, 2026

• predklebamr

  Public
  Predictive model for antimicrobial resistance in Klebsiella pneumoniae using Artificial Intelligence and Machine Learning

  R

  •

  MIT License

  •33 forks in omicscodeathon/predklebamr•00 stars in omicscodeathon/predklebamr•00 issues in omicscodeathon/predklebamr•00 pull requests in omicscodeathon/predklebamr•Updated Oct 9, 2026Oct 9, 2026

• roots

  Public
  Receptor-oriented Oncotarget Screening of Natural Compounds Under Thermodynamic Simulation with Ovarian Cancer

  HTML

  •

  MIT License

  •00 forks in omicscodeathon/roots•00 stars in omicscodeathon/roots•00 issues in omicscodeathon/roots•00 pull requests in omicscodeathon/roots•Updated Oct 9, 2026Oct 9, 2026

• gloom

  Public
  An interpretable machine learning package for candidate gene prioritization and co-expression network visualization

  HTML

  •

  MIT License

  •00 forks in omicscodeathon/gloom•22 stars in omicscodeathon/gloom•00 issues in omicscodeathon/gloom•00 pull requests in omicscodeathon/gloom•Updated Oct 7, 2026Oct 7, 2026

• gitworkshop

  Public
  A repository for GitHub class

  Shell

  •

  MIT License

  •3636 forks in omicscodeathon/gitworkshop•66 stars in omicscodeathon/gitworkshop•11 issue in omicscodeathon/gitworkshop•00 pull requests in omicscodeathon/gitworkshop•Updated Sep 16, 2026Sep 16, 2026

• brainroute

  Public
  Predicting Blood-Brain Barrier-Permeable mTOR Inhibitors for Alzheimer’s Disease Using Machine Learning

  Jupyter Notebook

  •

  MIT License

  •11 fork in omicscodeathon/brainroute•11 star in omicscodeathon/brainroute•00 issues in omicscodeathon/brainroute•00 pull requests in omicscodeathon/brainroute•Updated Sep 6, 2026Sep 6, 2026

• cellitac

  Public
  Reverse TF-Centric Modeling of Gene Regulation from scATAC-seq Data

  HTML

  •

  MIT License

  •00 forks in omicscodeathon/cellitac•22 stars in omicscodeathon/cellitac•00 issues in omicscodeathon/cellitac•00 pull requests in omicscodeathon/cellitac•Updated Aug 23, 2026Aug 23, 2026

• kenyavirocat

  Public
  Development of a Kenyan Human Gut Virome Catalogue

  R

  •

  MIT License

  •11 fork in omicscodeathon/kenyavirocat•00 stars in omicscodeathon/kenyavirocat•00 issues in omicscodeathon/kenyavirocat•00 pull requests in omicscodeathon/kenyavirocat•Updated Jul 17, 2026Jul 17, 2026

• rareinsight

  Public
  RareInsight: Developing a rare disease report generator for clinicians and patients

  R

  •

  MIT License

  •33 forks in omicscodeathon/rareinsight•1212 stars in omicscodeathon/rareinsight•00 issues in omicscodeathon/rareinsight•00 pull requests in omicscodeathon/rareinsight•Updated Jul 11, 2026Jul 11, 2026

• rhinotypeR

  Public
  A Bioconductor package for Rhinovirus Genotyping

  R

  •

  Other

  •11 fork in omicscodeathon/rhinotypeR•44 stars in omicscodeathon/rhinotypeR•00 issues in omicscodeathon/rhinotypeR•00 pull requests in omicscodeathon/rhinotypeR•Updated Jul 3, 2026Jul 3, 2026

• brainroutedb

  Public
  Database for Predicting Blood-Brain Barrier-Permeable mTOR Inhibitors for Alzheimer’s Disease Using Machine Learning

  TypeScript

  •

  MIT License

  •00 forks in omicscodeathon/brainroutedb•11 star in omicscodeathon/brainroutedb•00 issues in omicscodeathon/brainroutedb•00 pull requests in omicscodeathon/brainroutedb•Updated Jun 23, 2026Jun 23, 2026

• mofaomics

  Public
  Multi-Omics Biomarker Discovery in Endometriosis

  R

  •

  MIT License

  •00 forks in omicscodeathon/mofaomics•00 stars in omicscodeathon/mofaomics•11 issue in omicscodeathon/mofaomics•11 pull request in omicscodeathon/mofaomics•Updated Jun 16, 2026Jun 16, 2026

• tcellex

  Public
  T-Cell Expression Analysis in Lung Cancer using Bioinformatics

  Python

  •

  MIT License

  •11 fork in omicscodeathon/tcellex•00 stars in omicscodeathon/tcellex•00 issues in omicscodeathon/tcellex•00 pull requests in omicscodeathon/tcellex•Updated Jun 13, 2026Jun 13, 2026

• plaskmer

  Public
  Building an African Plasmid and mRNA Databank with K-mer-Based Search

  Python

  •

  MIT License

  •11 fork in omicscodeathon/plaskmer•00 stars in omicscodeathon/plaskmer•00 issues in omicscodeathon/plaskmer•00 pull requests in omicscodeathon/plaskmer•Updated Apr 30, 2026Apr 30, 2026

• autdb

  Public
  AutDB: A Privacy-First Cross-Dataset Baseline for Autism Spectrum Disorder Movement Analysis using MMASD and Engagnition

  Jupyter Notebook

  •

  MIT License

  •33 forks in omicscodeathon/autdb•44 stars in omicscodeathon/autdb•00 issues in omicscodeathon/autdb•00 pull requests in omicscodeathon/autdb•Updated Apr 11, 2026Apr 11, 2026

• mendelneuro

  Public
  Using Mendelian Randomization and Colocalization to Elucidate the Causal Relationship between Graves' diseases and Neurodenegrative diseases

  R

  •

  MIT License

  •11 fork in omicscodeathon/mendelneuro•00 stars in omicscodeathon/mendelneuro•00 issues in omicscodeathon/mendelneuro•00 pull requests in omicscodeathon/mendelneuro•Updated Dec 13, 2025Dec 13, 2025

• marvpred

  Public
  Machine Learning and Molecular Dynamics Simulations Predict Potential Compounds against Marburg Virus

  Jupyter Notebook

  •

  MIT License

  •00 forks in omicscodeathon/marvpred•00 stars in omicscodeathon/marvpred•00 issues in omicscodeathon/marvpred•00 pull requests in omicscodeathon/marvpred•Updated Dec 4, 2025Dec 4, 2025

• exvar

  Public
  exvar: an R Package for Gene Expression and Genetic Variation (SNPs , Indels, and CNVs) Data Analysis and Visualization

  R

  •

  Artistic License 2.0

  •55 forks in omicscodeathon/exvar•55 stars in omicscodeathon/exvar•00 issues in omicscodeathon/exvar•00 pull requests in omicscodeathon/exvar•Updated Nov 28, 2025Nov 28, 2025

• emimr

  Public
  EMImR: a Shiny Application for Identifying Transcriptomic and Epigenomic Changes

  R

  •

  Artistic License 2.0

  •11 fork in omicscodeathon/emimr•00 stars in omicscodeathon/emimr•00 issues in omicscodeathon/emimr•00 pull requests in omicscodeathon/emimr•Updated Nov 12, 2025Nov 12, 2025

• anticrcwu

  Public
  Deciphering Anti-Colorectal Cancer Mechanisms of Warburgia ugandensis: A Network Pharmacology, Bioinformatics, Molecular Docking, and Inflammatory Analysis

  MIT License

  •00 forks in omicscodeathon/anticrcwu•00 stars in omicscodeathon/anticrcwu•00 issues in omicscodeathon/anticrcwu•00 pull requests in omicscodeathon/anticrcwu•Updated Nov 9, 2025Nov 9, 2025

• denguedrug

  Public
  Machine Learning and Molecular Docking Prediction of Potential Inhibitors against Dengue Virus

  Jupyter Notebook

  •

  MIT License

  •33 forks in omicscodeathon/denguedrug•1010 stars in omicscodeathon/denguedrug•00 issues in omicscodeathon/denguedrug•00 pull requests in omicscodeathon/denguedrug•Updated Oct 2, 2025Oct 2, 2025

• cidamr

  Public
  Causal Inference Analysis of the Effect of Beta-Amyloid and Tau Proteins on Dementia Risk: Mendelian Randomization Analysis

  MIT License

  •11 fork in omicscodeathon/cidamr•00 stars in omicscodeathon/cidamr•00 issues in omicscodeathon/cidamr•00 pull requests in omicscodeathon/cidamr•Updated Sep 24, 2025Sep 24, 2025

• ml_sarscov2

  Public
  Machine Learning Approach for Predicting CoVID-19 Cases and Classifying SARS-CoV-2 Variants

  Jupyter Notebook

  •

  MIT License

  •22 forks in omicscodeathon/ml_sarscov2•00 stars in omicscodeathon/ml_sarscov2•22 issues in omicscodeathon/ml_sarscov2•00 pull requests in omicscodeathon/ml_sarscov2•Updated Aug 7, 2025Aug 7, 2025

• reproteomics

  Public
  The reproducibility crisis in proteomics - a bioinformatics perspective

  Python

  •

  MIT License

  •11 fork in omicscodeathon/reproteomics•11 star in omicscodeathon/reproteomics•00 issues in omicscodeathon/reproteomics•00 pull requests in omicscodeathon/reproteomics•Updated Jul 28, 2025Jul 28, 2025

• neurovar

  Public
  NeuroVar: A Genetic Expression and Variation data visualization tool for Neurological diseases’ biomarkers

  Python

  •

  Artistic License 2.0

  •33 forks in omicscodeathon/neurovar•22 stars in omicscodeathon/neurovar•00 issues in omicscodeathon/neurovar•00 pull requests in omicscodeathon/neurovar•Updated Apr 22, 2025Apr 22, 2025

• hpvonco

  Public
  In-silico Analysis of Phytochemicals Targeting HPV-16 and HPV-18 Oncoproteins for HPV-related Cancer Management

  MIT License

  •00 forks in omicscodeathon/hpvonco•00 stars in omicscodeathon/hpvonco•00 issues in omicscodeathon/hpvonco•00 pull requests in omicscodeathon/hpvonco•Updated Mar 25, 2025Mar 25, 2025

• epilepsy_var

  Public
  Integrated Analysis of Genetic Variation, Gene Expression and Methylation Changes in Epilepsy

  R

  •

  MIT License

  •22 forks in omicscodeathon/epilepsy_var•33 stars in omicscodeathon/epilepsy_var•00 issues in omicscodeathon/epilepsy_var•00 pull requests in omicscodeathon/epilepsy_var•Updated Dec 5, 2024Dec 5, 2024

• prostruct

  Public
  ProStruc: A Python-based Tool for Homology Modeling and 3D Structure Prediction

  Python

  •

  MIT License

  •00 forks in omicscodeathon/prostruct•1111 stars in omicscodeathon/prostruct•00 issues in omicscodeathon/prostruct•00 pull requests in omicscodeathon/prostruct•Updated Oct 31, 2024Oct 31, 2024