Issues

• Segger fails on compute environment

  bug
  openproblems-bio/task_spatial_segmentation#45 · Filter by author rcannood opened on May 19, 2026
  4

  

• Overview of datasets on S3 bucket

  openproblems-bio/task_spatial_segmentation#44 · Filter by author rcannood opened on May 19, 2026
  2

  

• Rename and redesign spatial_unlabelled and spatial_solution

  openproblems-bio/task_spatial_segmentation#43 · Filter by author heylf opened on May 19, 2026

• Export method masks

  enhancement
  openproblems-bio/task_spatial_segmentation#21 · Filter by author ycao6928 opened on May 18, 2026
  2

• Implementing a prior segmentation for transcript assignment methods

  enhancement
  openproblems-bio/task_spatial_segmentation#19 · Filter by author dariarom94 opened on May 17, 2026
  

• Metric that reads in (ANY) source of cell type annotation and evaluates performance

  enhancement
  openproblems-bio/task_spatial_segmentation#17 · Filter by author dariarom94 opened on May 15, 2026

• Candidate metrics

  enhancement
  openproblems-bio/task_spatial_segmentation#10 · Filter by author rcannood opened on Apr 30, 2026

• Additional data loaders

  enhancement
  openproblems-bio/task_spatial_segmentation#7 · Filter by author dariarom94 opened on Apr 28, 2026
  1

  

• Cell type annotation module

  enhancement
  openproblems-bio/task_spatial_segmentation#6 · Filter by author dariarom94 opened on Apr 28, 2026
  1

  

• Methods to mirror from txSim

  openproblems-bio/task_spatial_segmentation#2 · Filter by author dariarom94 opened on Apr 20, 2026
  1