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Account for v-sites in energy.predict - #193

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fjclark merged 4 commits into
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account-for-vsites-in-predict
Oct 21, 2026
Merged

fjclark merged 4 commits into
mainfrom
account-for-vsites-in-predict

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@fjclark

@fjclark fjclark commented Oct 15, 2026

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This addresses #192 by adding virtual site coordinates in energy.predict.

AI Use Declaration

I worked with Claude Opus 5.5 to draft this fix, and went through a few iterations of updating with Claude and manual tweaking. I've inspected all changes and take responsibility for correctness.

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codecov-commenter commented Oct 15, 2026 •

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 82.06%. Comparing base (ac1839b) to head (38e3622).

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #193      +/-   ##
==========================================
+ Coverage   82.04%   82.06%   +0.01%     
==========================================
  Files          59       59              
  Lines        5308     5313       +5     
==========================================
+ Hits         4355     4360       +5     
  Misses        953      953              

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@mattwthompson mattwthompson left a comment

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LGTM, happy this was not only possible but appeared to be doable with a reasonable amount of work

I don't think I have changed tyff.targets.energy in the past week or two but please merge upstream changes back in before merging

Comment thread tyff/_tests/targets/test_energy.py
Comment thread tyff/_tests/targets/test_energy.py
@fjclark

fjclark commented Oct 21, 2026

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Thanks Matt, merging as the CI is green having merged in the upstream changes.

@fjclark
fjclark merged commit ab5bf71 into main Oct 21, 2026
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@fjclark
fjclark deleted the account-for-vsites-in-predict branch October 21, 2026 08:59
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3 participants