NCBI - National Center for Biotechnology Information/NLM/NIH

Unlock the Power of NCBI Data. Pre-conference workshop for ASM Microbe 2026

Empowering Your Microbial Research With Expert Tools and Resources: Unlock the Power of NCBI Data

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

ncbi-vdb

SRA Tools

NCBI C++ Toolkit package sources

StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.

Incremental building of phylogenetic distance trees

web-based protein structure viewer and analysis tool interactively or in batch mode

Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation