All pull requests

Pull requests

• Update Jose's GitHub handle

  template-and-tools
  #7225·domgz opened Nov 12, 2026Contributor·2 tasks done·

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  1

• Bump nokogiri from 1.19.4 to 1.19.5

  dependenciesrubytemplate-and-tools
  #7223·dependabot[bot] opened Nov 11, 2026Bot·

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• Cretae coreca gtn

  community
  #7222·scorreard opened Nov 10, 2026Contributor·2 tasks done·

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  1

• Add amplicon decontamination and batch correction tutorial

  microbiome
  #7173·MaraBesemer opened Oct 20, 2026·4 tasks·

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  1

• Add astro example to bmz model

  imaging
  #7171·volodymyrss opened Oct 19, 2026Collaborator·

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  6

• Clarify standalone Planemo setup and the first wrapper lint checkpoint

  devtemplate-and-tools
  #7166·lissandrakruse opened Oct 16, 2026·

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  3

• Update Maker tutorials to latest tool versions

  genome-annotation
  #7162·bebatut opened Oct 14, 2026Member·1 task·

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  2

• please add this tutorial/training to the GTN wich explains the proteomiqon pipeline

  proteomicstemplate-and-tools
  #7097·paulineHans opened Sep 14, 2026·2 tasks·

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  93

  

• Add Galaxy tutorial for breast cancer spatial transcriptomics analysis from Galaxy-SPICA

  single-cell
  #7025·khaled196 opened Aug 4, 2026Contributor·2 tasks done·

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  124

• Fix tag parsing for optional filename suffixes

  transcriptomics
  #6996·sapunyangkut opened Jul 13, 2026Contributor·

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  2

• New tutorial: Clustering 3K PBMCs with Bioconductor

  single-cell
  #6976·kevinrue opened Jul 3, 2026Contributor·

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  1

• Earth Observation path to imaging introduction tutorial

  imaging
  #6970·annefou opened Jul 1, 2026Collaborator·

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  6

• add tutorial "How to turn ancient calendar sources into absolute dates"

  digital-humanitiestemplate-and-tools
  #6957·jnussbaum opened Jun 25, 2026·

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  4

• Update tutorial following tool update

  ecology
  #6933·TuturBaba opened Jun 10, 2026Contributor·

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  1

• Create QGIS Antarctic tutorial.md

  ecologytemplate-and-tools
  #6922·yvanlebras opened May 29, 2026Collaborator·

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• New training: Transcriptome complexity analysis with TSENAT

  transcriptomics
  #6795·gallardoalba opened Apr 20, 2026Contributor·

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  10

• Earth 101: Major update of the introductory tutorial

  climatetemplate-and-tools
  #6792·Marie59 opened Apr 15, 2026Collaborator·

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  19

• Update VGP workflows tutorial to latest workflow versions

  assembly
  #6728·Delphine-L opened Mar 12, 2026Contributor·5 tasks·

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  1

  

• Update Chloroplast Assembly tutorial

  assembly
  #6726·Delphine-L opened Mar 12, 2026Contributor·5 of 7 tasks·

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  4

  

• Update Assembly Decontamination tutorial to match latest VGP workflow with FCS Gx

  assembly
  #6725·Delphine-L opened Mar 12, 2026Contributor·4 tasks·

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• Add CPT phage training material to Galaxy training (2nd try)

  #6616·jasonjgill opened Jan 25, 2026·

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  17

  

• Update SRC Pulsar training

  admin
  #6581·mirelaminkova opened Dec 18, 2025Contributor·

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  6

• Fix mamba version

  admin
  #6560·lldelisle opened Dec 10, 2025Collaborator·

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  7

• draft: spatial-tutorial

  single-celltemplate-and-tools
  #6547·NavandarM opened Dec 4, 2025·

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  1

• Admin training: add some lines on how to apply a diff

  admin
  #6515·bernt-matthias opened Nov 24, 2025Contributor·

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  7