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collaborativebioinformatics

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  1. GeneVar GeneVar Public

    Jupyter Notebook 13 3

  2. Mosaicome Mosaicome Public

    Shell 13 3

  3. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  4. STRdust STRdust Public

    Python 12 3

  5. BioGraphRAG BioGraphRAG Public

    Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)

    Python 12 3

  6. nibSV nibSV Public

    Nim 9 4

Repositories

Showing 10 of 147 repositories
  • collaborativebioinformatics/federatedhaploblocks's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 9, 2026
  • Chimpanzee-isoform-diversity Public

    we love chimpanzee

    collaborativebioinformatics/Chimpanzee-isoform-diversity's past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Sep 9, 2026
  • benchmark_reference_genome_assembly Public

    Benchmarking of how the quality of the reference genome assembly affects the discovery of structural variants, using aligners: Minimap2 & Winnowmap

    collaborativebioinformatics/benchmark_reference_genome_assembly's past year of commit activity
    Python 1 MIT 2 0 1 Updated Sep 3, 2026
  • inTRuder Public

    Identifying novel TR loci and motifs in individuals that are not in the reference genome

    collaborativebioinformatics/inTRuder's past year of commit activity
    Jupyter Notebook 6 MIT 2 8 7 Updated Sep 2, 2026
  • collaborativebioinformatics/Tahoe100M_population_dynamics's past year of commit activity
    Python 3 MIT 1 0 1 Updated Aug 31, 2026
  • collaborativebioinformatics/SoMosaic_group12's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Aug 28, 2026
  • SVantigen Public

    Team 8

    collaborativebioinformatics/SVantigen's past year of commit activity
    Nextflow 5 MIT 3 2 0 Updated Aug 28, 2026
  • Haploblock_SV Public

    Team 8 at SV Hackathon 2026

    collaborativebioinformatics/Haploblock_SV's past year of commit activity
    Python 2 MIT 0 0 1 Updated Aug 28, 2026
  • scOnco-scorer Public
    collaborativebioinformatics/scOnco-scorer's past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 28, 2026
  • collaborativebioinformatics/Foldback_hunters's past year of commit activity
    Python 1 MIT 1 0 0 Updated Aug 28, 2026