process-bigraph-lang

A language server, CLI and Python package for .pblang, a domain specific language that describes process bigraph composites: a tree-shaped, verifiable projection of the composite document, with imported interface declarations, parameters, open sites, units and model headers that the checker verifies before anything runs. See the architecture and the design.

pip install process_bigraph_lang
python -m process_bigraph_lang.v2 compile composite.pblang --interfaces headers.manifest.json -o composite.json
python -m process_bigraph_lang.v2 decompile composite.json
python -m process_bigraph_lang.v2 check composite.pblang --interfaces headers.manifest.json
python -m process_bigraph_lang.v2 describe my_package.processes --manifest headers.manifest.json --out headers/

• Github repository: https://github.com/biosimulations/process-bigraph-lang/
• Documentation https://biosimulations.github.io/process-bigraph-lang/

Getting started with your project

First, create a repository on GitHub with the same name as this project, and then run the following commands:

git init -b main
git add .
git commit -m "init commit"
git remote add origin git@github.com:biosimulations/process-bigraph-lang.git
git push -u origin main

Finally, install the environment and the pre-commit hooks with

make install

You are now ready to start development on your project! The CI/CD pipeline will be triggered when you open a pull request, merge to main, or when you create a new release.

To finalize the set-up for publishing to PyPI or Artifactory, see here. For activating the automatic documentation with MkDocs, see here. To enable the code coverage reports, see here.

Releasing a new version

• Create an API Token on PyPI.
• Add the API Token to your projects secrets with the name PYPI_TOKEN by visiting this page.
• Create a new release on Github.
• Create a new tag in the form *.*.*.
• For more details, see here.

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Repository initiated with fpgmaas/cookiecutter-poetry.