Bump the pre-commit-hooks group across 1 directory with 3 updates

.pre-commit-config.yaml

@@ -9,15 +9,15 @@ repos:
     -   id: check-yaml
     -   id: detect-private-key
 -   repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "v2.25.0"
+    rev: "v2.26.0"
     hooks:
     -   id: pyproject-fmt
 -   repo: https://github.com/citation-file-format/cffconvert
     rev: b6045d78aac9e02b039703b030588d54d53262ac
     hooks:
     -   id: validate-cff
 -   repo: https://github.com/codespell-project/codespell
-    rev: v2.4.2
+    rev: v2.4.3
     hooks:
     -   id: codespell
         exclude: |
@@ -39,7 +39,7 @@ repos:
     -   id: yamllint
         exclude: pre-commit-config.yaml
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.15.19"
+    rev: "v0.16.1"
     hooks:
     -   id: ruff-format
     -   id: ruff-check

docs/src/conf.py

@@ -9,7 +9,7 @@
 sys.path.insert(0, basedir)
 
 project = "OME-IRIS"
-copyright = "2026, OME-IRIS contributors"  # noqa: A001
+copyright = "2026, OME-IRIS contributors"
 author = "OME-IRIS contributors"
 
 extensions = [

pyproject.toml

@@ -53,6 +53,15 @@ version_scheme = "guess-next-dev"
 local_scheme = "node-and-date"
 write_to = "src/OME_IRIS/_version.py"
 
+[tool.ruff]
+# OME_IRIS is an intentional uppercase package name mirrored by a lowercase
+# `ome_iris` alias (see [tool.setuptools] packages above).
+lint.ignore = [ "N999" ]
+# Declare both names explicitly: isort's directory-based first-party
+# detection is filesystem case-sensitivity dependent, and `ome_iris` only
+# resolves as a real path on case-insensitive filesystems (e.g. macOS).
+lint.isort.known-first-party = [ "OME_IRIS", "ome_iris" ]
+
 [tool.pytest]
 ini_options.pythonpath = [ "src" ]
 ini_options.addopts = [ "-q" ]

src/OME_IRIS/clean.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
-from pathlib import Path
 import shutil
+from pathlib import Path
 
 
 def clean_local_data(data_dir: Path) -> None:

src/OME_IRIS/datasets.py

@@ -1,19 +1,18 @@
 from __future__ import annotations
 
-from dataclasses import dataclass, field
 import hashlib
 import json
-from pathlib import Path
 import re
+from dataclasses import dataclass, field
+from pathlib import Path
 from typing import Any
 from urllib.request import urlopen
 
-from PIL import Image
 import yaml
+from PIL import Image
 
 from OME_IRIS.fetch import _download, _parse_github_tree_url
 
-
 PRESET_SUBSETS: dict[str, dict[str, Any]] = {
     "tiny": {"images": 5},
     "small": {"images": 20},

src/OME_IRIS/fetch.py

@@ -1,21 +1,22 @@
 from __future__ import annotations
 
 import argparse
-from dataclasses import dataclass, field
 import hashlib
 import json
-from pathlib import Path
 import shutil
 import subprocess
 import tarfile
 import tempfile
+import zipfile
+from dataclasses import dataclass, field
+from pathlib import Path
 from urllib.parse import urlparse
 from urllib.request import urlopen, urlretrieve
-import zipfile
 
-from OME_IRIS.rocrate import write_rocrate_metadata
 import yaml
 
+from OME_IRIS.rocrate import write_rocrate_metadata
+
 
 @dataclass
 class FetchResult:
@@ -91,11 +92,7 @@ def _extract_archive(
         suffixes = "".join(archive_path.suffixes).lower()
         if suffixes.endswith(".zip"):
             fmt = "zip"
-        elif (
-            suffixes.endswith(".tar.gz")
-            or suffixes.endswith(".tgz")
-            or suffixes.endswith(".tar")
-        ):
+        elif suffixes.endswith((".tar.gz", ".tgz", ".tar")):
             fmt = "tar"
         else:
             raise ValueError(f"Unable to infer archive format for {archive_path.name}")

src/OME_IRIS/scaffold.py

@@ -1,12 +1,11 @@
 from __future__ import annotations
 
+import re
 from dataclasses import dataclass
 from pathlib import Path
-import re
 
 import yaml
 
-
 KNOWN_FORMATS = {
     ".csv": "csv",
     ".parquet": "parquet",

src/OME_IRIS/verify.py

@@ -1,8 +1,8 @@
 from __future__ import annotations
 
 import argparse
-from dataclasses import dataclass
 import hashlib
+from dataclasses import dataclass
 from pathlib import Path
 
 import yaml

tests/test_datasets.py

@@ -3,8 +3,8 @@
 import json
 from pathlib import Path
 
-from PIL import Image
 import yaml
+from PIL import Image
 
 from OME_IRIS import datasets
 from ome_iris import datasets as lower_datasets