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Release 2026.3.0 - #111

Merged

bencap merged 29 commits into

mavedb-mainfrom

mavedb-dev

Oct 15, 2026

Merged

Release 2026.3.0#111
bencap merged 29 commits into
mavedb-mainfrom
mavedb-dev

Commits on Jun 3, 2026
- fix(vrs): route allele identification through digest-clearing helper
  bencap
  committed
  c84f607
Commits on Jun 9, 2026
- chore(AI): Add .claude to gitignore
  bencap
  committed
  ad228a9
Commits on Jun 10, 2026
- feat(mapper): typed mapping outcomes and assay-level preferred layer
  bencap
  committed
  847bf16
- feat(mapper): genomic-accession transcript selection and deterministic projection
  bencap
  committed
  07fd08a
Commits on Jun 17, 2026
- fix(annotate): prevent null-layer re-attribution from duplicating preferred-layer records
  bencap
  committed
  805a1e4
Commits on Jun 29, 2026
- fix(align): correct strand and hit ranges for minus-strand protein alignments
  bencap
  committed
  4d84c4d
- fix(annotate): return NM transcript as cdna mapped reference sequence
  bencap
  committed
  764f666
Commits on Jun 30, 2026
- chore(schema): add MappingOutcome definition and outcome field to support detailed mapping results
  bencap
  committed
  5602c38
Commits on Jul 7, 2026
- fix: Remove underscore from check for Ensembl Protein ID
  davereinhart
  committed
  b317fd3
Commits on Jul 9, 2026
Commits on Jul 11, 2026
- fix(transcripts): collapse all() list arg and add target local
  bencap
  committed
  a3aecbc
Commits on Jul 21, 2026
- feat(transcripts): map non-RefSeq accession targets to RefSeq MANE counterparts
  bencap
  committed
  9b00aef
Commits on Aug 26, 2026
- fix(vrs): recompute allele identity from normalized content
  bencap
  committed
  1116463
Commits on Sep 30, 2026
- fix(seqrepo): resolve accession sequences from SeqRepo and commit shared writes
  bencap
  committed
  bd8f230
- chore(version): bump dcd mapping version to 2026.3.0
  bencap
  committed
  90c2120
- fix(tests): import Extension from ga4gh.core in annotate tests
  bencap
  committed
  f58d51c
- chore(deps): require starlette>=1.3.1 for the mapping API server
  bencap
  committed
  c6ff63a
- build(docker): fetch UCSC resources over HTTPS and verify hg38.2bit
  bencap
  committed
  c94ea30
- ci: remove PyPI publish workflow
  bencap
  committed
  74a8591
Commits on Oct 6, 2026
- fix(annotate): emit cdna reference for declared NM_/ENST accession targets
  bencap
  committed
  fe60406
Commits on Oct 9, 2026
- fix(transcripts): swap to the MANE counterpart only when it encodes the declared protein
  bencap
  committed
  b225b7e
Commits on Oct 10, 2026
- fix(align): make the BLAT timeout configurable and default it to 20 minutes
  bencap
  committed
  56f8ef0
Commits on Oct 11, 2026
- fix(align): measure minus-strand hits from their lower bound when picking by proximity
  bencap
  committed
  118ed21
Commits on Oct 12, 2026
- fix(vrs_map): name stored sequences by SeqRepo's own digest
  bencap
  committed
  8c773d1
Commits on Oct 15, 2026
- fix(mavedb_data): read each target's own UniProt reference
  bencap
  committed
  7fb9a43
- fix(transcripts): compute the target protein before the UniProt fallback
  bencap
  committed
  c90e195

Commits

Commits on Jun 3, 2026

Commits on Jun 9, 2026

Commits on Jun 10, 2026

Commits on Jun 17, 2026

Commits on Jun 29, 2026

Commits on Jun 30, 2026

Commits on Jul 7, 2026

Commits on Jul 9, 2026

Commits on Jul 11, 2026

Commits on Jul 21, 2026

Commits on Aug 26, 2026

Commits on Sep 30, 2026

Commits on Oct 6, 2026

Commits on Oct 9, 2026

Commits on Oct 10, 2026

Commits on Oct 11, 2026

Commits on Oct 12, 2026

Commits on Oct 15, 2026