Issues

• Incorporating quality scores for ASE counts

  TheFraserLab/ASEr#18 · Filter by author rmagoglia opened on Nov 10, 2016
  2

• Reads dropped during ASE calling?

  TheFraserLab/ASEr#17 · Filter by author rmagoglia opened on Jul 20, 2016
  1

• Skipping of Indels in CountSNPASE

  TheFraserLab/ASEr#15 · Filter by author petercombs opened on Jun 20, 2016
  1

• Make sure we throw out chimeric reads

  TheFraserLab/ASEr#14 · Filter by author petercombs opened on May 9, 2016

• Fetch over entire genes...

  TheFraserLab/ASEr#13 · Filter by author carloartieri opened on Apr 3, 2016

• Add summary of algorithm to README.rst

  enhancement
  TheFraserLab/ASEr#8 · Filter by author MikeDacre opened on Mar 23, 2016

• Allow use of GFF/GTF/VCF files instead of bed files.

  enhancement
  TheFraserLab/ASEr#7 · Filter by author MikeDacre opened on Mar 23, 2016
  2

  

• Change input/output tables to be handled by pandas

  enhancement
  TheFraserLab/ASEr#4 · Filter by author MikeDacre opened on Mar 22, 2016
  2

  

• Alter code to use pysam's bam indexing to speed up parsing.

  enhancement
  TheFraserLab/ASEr#2 · Filter by author MikeDacre opened on Mar 22, 2016
  3