fix(ci): repair nightly deep assurance workflow

.github/workflows/nightly-deep-assurance.yml

@@ -15,8 +15,9 @@ jobs:
         with:
           python-version: "3.12"
           cache: "pip"
-      - run: python -m pip install -e '.[dev,quality]' mutmut
-      - run: python -m mutmut run --paths-to-mutate codewiki/src/enduser
+      - run: python -m pip install uv
+      - run: uv pip install --system -e . pytest pytest-cov mutmut
+      - run: mutmut run
 
   api_fuzz_and_contracts:
     name: api_fuzz_and_contracts
@@ -27,7 +28,8 @@ jobs:
         with:
           python-version: "3.12"
           cache: "pip"
-      - run: python -m pip install -e '.[dev]' schemathesis
+      - run: python -m pip install uv
+      - run: uv pip install --system -e . schemathesis
       - run: echo "No OpenAPI contract is currently published; add one to enable schemathesis targets."
 
   parser_fuzzing:
@@ -46,7 +48,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v5
-      - uses: aquasecurity/trivy-action@0.30.0
+      - uses: aquasecurity/trivy-action@v0.36.0
         with:
           scan-type: fs
           scan-ref: .
@@ -68,5 +70,6 @@ jobs:
         with:
           python-version: "3.12"
           cache: "pip"
-      - run: python -m pip install -e '.[dev]' pytest-repeat
+      - run: python -m pip install uv
+      - run: uv pip install --system -e . pytest pytest-cov pytest-repeat
       - run: python -m pytest tests/test_enduser_review_e2e.py --count=5 -q

pyproject.toml

@@ -26,7 +26,7 @@ classifiers = [
 dependencies = [
     "click>=8.1.0",
     "keyring>=24.0.0",
-    "GitPython>=3.1.41",
+    "GitPython>=3.1.50",
     "Jinja2>=3.1.6",
     "tree-sitter>=0.23.2",
     "tree-sitter-language-pack>=0.8.0",
@@ -42,14 +42,14 @@ dependencies = [
     "anthropic>=0.52.0",
     "markdown-it-py>=3.0.0",
     "mcp>=1.23.0",
-    "openai>=2.30.0",
-    "litellm>=1.83.0",
+    "openai>=2.24.0",
+    "litellm>=1.83.10",
     "pydantic>=2.11.7",
     "pydantic-settings>=2.10.1",
-    "pydantic-ai>=1.56.0",
+    "pydantic-ai-slim[openai]>=1.56.0,<1.67.0",
     "requests>=2.33.0",
     "tiktoken>=0.8.0",
-    "python-dotenv>=1.1.1",
+    "python-dotenv>=1.2.2",
     "rich>=14.1.0",
     "networkx>=3.5",
     "psutil>=7.0.0",
@@ -58,7 +58,7 @@ dependencies = [
     "mermaid-py>=0.8.0",
     "fastapi>=0.135.2",
     "uvicorn>=0.35.0",
-    "python-multipart>=0.0.22",
+    "python-multipart>=0.0.27",
     "colorama>=0.4.6",
     "logfire>=4.1.0"
 ]
@@ -160,6 +160,15 @@ source = ["codewiki"]
 show_missing = true
 skip_empty = true
 
+[tool.mutmut]
+paths_to_mutate = ["codewiki/src/enduser"]
+also_copy = [
+    "codewiki/__init__.py",
+    "codewiki/cli",
+    "codewiki/prompts",
+    "codewiki/templates",
+]
+
 [tool.bandit]
 exclude_dirs = ["tests", ".tmp_make", ".tmp_manual_review", ".tmp_manual_review_live"]
 targets = ["codewiki"]

requirements.txt

@@ -3,7 +3,7 @@
 # `[project.dependencies]` in `pyproject.toml`.
 click>=8.1.0
 keyring>=24.0.0
-GitPython>=3.1.41
+GitPython>=3.1.50
 Jinja2>=3.1.6
 tree-sitter>=0.23.2
 tree-sitter-language-pack>=0.8.0
@@ -19,14 +19,14 @@ tree-sitter-kotlin>=1.1.0
 anthropic>=0.52.0
 markdown-it-py>=3.0.0
 mcp>=1.23.0
-openai>=2.30.0
-litellm>=1.83.0
+openai>=2.24.0
+litellm>=1.83.10
 pydantic>=2.11.7
 pydantic-settings>=2.10.1
-pydantic-ai>=1.56.0
+pydantic-ai-slim[openai]>=1.56.0,<1.67.0
 requests>=2.33.0
 tiktoken>=0.8.0
-python-dotenv>=1.1.1
+python-dotenv>=1.2.2
 rich>=14.1.0
 networkx>=3.5
 psutil>=7.0.0
@@ -35,6 +35,6 @@ mermaid-parser-py>=0.0.2
 mermaid-py>=0.8.0
 fastapi>=0.135.2
 uvicorn>=0.35.0
-python-multipart>=0.0.22
+python-multipart>=0.0.27
 colorama>=0.4.6
 logfire>=4.1.0