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[WIP] New matrix abstraction - #87

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dance858 merged 31 commits into

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new-matrix-abstraction

May 14, 2026

Commits on May 10, 2026
- start with permuted dense struct, without integration
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- better polymorphism
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- make hessian matrix
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- dispatch for elementwise chainr rule hessian
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Commits on May 11, 2026
- better polymorphism for copying sparsity pattern
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- remove many to_csr
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- remove memcpy in to_csr
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- add profile for trimmed log reg
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- infrastructure for matrix multiplication when one matrix is permuted_dense
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- ran formatter
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Commits on May 12, 2026
- better BTDA for permuted dense x permuted_dense
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- more cache friendly BA_pd_csc_fill_values
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- edits
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- better permuted dense times CSC function
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- better infrastructure permuted dense
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- get rid of unnecessary allocation
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- change name of some functions
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- run formatter
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- permutation dense preserving transpose implementation via index polymorhpim
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Commits on May 13, 2026
- clean up multiply
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- clean up matrix.h
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- lazy allocation of dwork in permuted_dense
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- Implement block_left_mult on permuted_dense
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- swap dense matrix for permuted dense and delete dense_matrix
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- more infrastructure
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- better BA_pd_pd_fill_values
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- add permuted dense polymorphism to left matmul
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- minor
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- add test
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Commits on May 14, 2026
- clean up left_matmul and enable parameter
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- fix filename
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  d74ea3e