Structural and Functional Genomics Laboratory
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ConsensuSV-pipeline
ConsensuSV-pipeline PublicAutomatised pipeline of ConsensuSV workflow.
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Repositories
- 3dgnome-ng Public
Highly experimental playground version of 3D-GNOME derived from original paper and source code
- TheChromatinGame Public
An experimental interactive python game about the chromatin folding. Feel free to play!
- enhancer3D Public
A database of 3D chromatin model ensembles and enhancer-promoter distance profiles for archaic (Neanderthal, Denisovan) and modern human genomes (GM12878, H1-ESC, HFFc6)
- pyLoopSage Public
Updated version of the stochastic loop extrusion model: LoopSage with capability to run incredibly fast, parallelized across CPU cores. This package is even more user-friendly and it can be installed via PyPI.
- intrinsic_linking_analysis Public
Analysis for the "Intrinsic linking of chromatin fiber in human cells" manuscript.
- tbooo Public
The Biobank Of Our Own - scripts that recreate access patterns of UK Biobank using data from 1000 Genomes and Simons Genome Diversity Project
- dcHiChIP Public
dcHiChIP is Nextflow pipeline for analysis of HiChIP data. It supports loop detection, peak calling, TADs, compartments, stripes, motif analysis, and 3D chromatin modeling.
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