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Exposing the stream in the logging module #5367

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Exposing the stream in the logging module #5367
jauy123 wants to merge 5 commits intoMDAnalysis:developfrom
jauy123:logging

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@jauy123 jauy123 commented Apr 23, 2026

Initial draft that address #5357. It should be a quick relatively painless change to implement.

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LLMs or other AI-powered tools (beyond simple IDE use cases) were used in this contribution: yes / no

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  • Issue raised/referenced?
  • Tests updated/added?
  • Documentation updated/added?
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I certify that I can submit this code contribution as described in the Developer Certificate of Origin, under the MDAnalysis LICENSE.


📚 Documentation preview 📚: https://mdanalysis--5367.org.readthedocs.build/en/5367/

@jauy123 jauy123 changed the title intial pseudocode Exposing the stream in the logging module Apr 23, 2026
jauy123 added 4 commits April 22, 2026 22:58
Need to add a fmt_string parameter if want to replicate earlier behavior
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codecov Bot commented Apr 23, 2026

Codecov Report

❌ Patch coverage is 55.55556% with 8 lines in your changes missing coverage. Please review.
✅ Project coverage is 93.81%. Comparing base (9269430) to head (f1be0df).
⚠️ Report is 2 commits behind head on develop.

Files with missing lines Patch % Lines
package/MDAnalysis/lib/log.py 55.55% 5 Missing and 3 partials ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #5367      +/-   ##
===========================================
- Coverage    93.84%   93.81%   -0.04%     
===========================================
  Files          182      182              
  Lines        22497    22504       +7     
  Branches      3200     3205       +5     
===========================================
- Hits         21113    21112       -1     
- Misses         922      927       +5     
- Partials       462      465       +3     

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