New parent POM

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,9 +1,15 @@
-### Please ensure you have completed the following before submitting:
-- [ ] Ran all tests to ensure existing functionality wasn't broken
-- [ ] Ran all quality assurance checks and fixed any new errors or warnings, which include:
-* [PMD](https://pmd.github.io/)
-* [FindBugs](http://findbugs.sourceforge.net/)
-* [Jacoco](http://eclemma.org/jacoco/) code coverage
-
-**Note: you can complete both boxes by running and fixing warnings/errors with** `gradle clean check`
-- [ ] Code is [self documenting](https://en.wikipedia.org/wiki/Self-documenting_code) or a short comment when self documenting isn't possible 
+Fixes DD-
+
+# Description of changes
+
+# How to test
+
+# Related PRs
+
+(Add links)
+
+*
+
+# Notify
+
+@DANS-KNAW/core-systems

.github/workflows/build.yml

@@ -0,0 +1,24 @@
+name: Build project
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+   build:
+     runs-on: ubuntu-latest
+
+     steps:
+       - uses: actions/checkout@v6
+       - name: Set up JDK 21
+         uses: actions/setup-java@v5
+         with:
+           java-version: '21'
+           distribution: 'temurin'
+           cache: 'maven'
+       - name: Build with Maven
+         run: mvn -B clean package --file pom.xml

.github/workflows/codeql.yml

@@ -0,0 +1,83 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "master" ]
+  schedule:
+    - cron: '20 13 * * 3'
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'java' ]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
+        # Use only 'java' to analyze code written in Java, Kotlin or both
+        # Use only 'javascript' to analyze code written in JavaScript, TypeScript or both
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v6
+
+    - name: Set up JDK 21
+      uses: actions/setup-java@v5
+      with:
+        java-version: '21'
+        distribution: 'temurin'
+        cache: 'maven'
+
+      # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v3
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+
+        # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+        # queries: security-extended,security-and-quality
+
+
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, Go, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v3
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+    #   If the Autobuild fails above, remove it and uncomment the following three lines.
+    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+    # - run: |
+    #     echo "Run, Build Application using script"
+    #     ./location_of_script_within_repo/buildscript.sh
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v3
+      with:
+        category: "/language:${{matrix.language}}"

.github/workflows/copilot-setup-steps.yml

@@ -0,0 +1,13 @@
+name: Copilot Setup Steps
+on: workflow_dispatch
+jobs:
+  copilot-setup-steps:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-java@v4
+        with:
+          java-version: '21'
+          distribution: 'temurin'
+          cache: 'maven'
+      - run: mvn -B dependency:go-offline

.github/workflows/coverage.yml

@@ -0,0 +1,20 @@
+name: Codecov
+on: [push, pull_request]
+jobs:
+  codecov:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v6
+      - name: Set up JDK 21
+        uses: actions/setup-java@v5
+        with:
+          java-version: '21'
+          distribution: 'temurin'
+          cache: 'maven'
+      - name: Install dependencies
+        run: mvn install -DskipTests=true -Dmaven.javadoc.skip=true -B -V
+      - name: Run tests and collect coverage
+        run: mvn -B test
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v6

.github/workflows/docs.yml

@@ -0,0 +1,36 @@
+name: Build documentation site
+
+on:
+  push:
+    branches:
+      - master
+
+jobs:
+  mkdocs:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Set up Python
+        uses: actions/setup-python@v6
+        with:
+          python-version: '3.10'
+          cache: 'pip'
+
+      - name: Set up JDK 21
+        uses: actions/setup-java@v5
+        with:
+          distribution: 'temurin'
+          java-version: '21'
+          cache: 'maven'
+
+      - name: Generate maven site
+        run: mvn -B clean test site
+
+      - name: Copy javadocs to site folder
+        run: cp -r target/site/ docs/mvnsite/
+
+      - name: Run script
+        run: bash .github/workflows/mkdocs/mkdocs.sh
+        shell: bash

.github/workflows/mkdocs/mkdocs.sh

@@ -0,0 +1,27 @@
+#!/usr/bin/env bash
+#
+# Copyright (C) 2016 DANS - Data Archiving and Networked Services (info@dans.knaw.nl)
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+set -e
+
+REMOTE="https://@github.com/${GITHUB_REPOSITORY}"
+git remote set-url origin ${REMOTE}
+
+pip install -r .github/workflows/mkdocs/requirements.txt
+
+echo "START deploying docs to GitHub pages..."
+mkdocs gh-deploy --force
+echo "DONE deploying docs to GitHub pages."

.github/workflows/mkdocs/requirements.txt

@@ -0,0 +1,5 @@
+mkdocs==1.6.1
+pyyaml==6.0.3
+pymdown-extensions==11.0.1
+mkdocs-markdownextradata-plugin==0.2.6
+mkdocs-macros-plugin==1.3.7

.gitignore

@@ -1,9 +1,34 @@
-target/
-bin/
-build/
-bagit-conformance-suite/
-.project
-.settings/
+*.iml
+*.sc
+*.swp
+*~
+.DS_Store
 .classpath
+.dans.knaw.nl-yum-repo
 .gradle/
-.DS_Store
+.idea/
+.project
+.settings/
+.vagrant/
+.venv-mkdocs
+.yum-repo
+bin/
+build/
+buildNumber.properties
+data-*/
+data/
+dependency-reduced-pom.xml
+etc/
+gradle.properties
+init-project.sh
+out/
+pom.xml.next
+pom.xml.releaseBackup
+pom.xml.tag
+pom.xml.versionsBackup
+release.properties
+/site
+target/
+venv/
+docs/mvnsite/
+/__pycache__*

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "bagit-conformance-suite"]
+	path = bagit-conformance-suite
+	url = https://github.com/LibraryOfCongress/bagit-conformance-suite.git