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Fix directory path in quick start instructions #143

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Merged
jjokella merged 4 commits into from
Sep 20, 2026
Merged

Fix directory path in quick start instructions #143

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9eec327
Fix directory path in quick start instructions
jjokella Sep 17, 2026
ba9cbf5
adding ./ for running script
jjokella Sep 17, 2026
0ac7a19
JSC-HPC additions (Slurm environment)
jjokella Sep 17, 2026
83b864a
Update quick start guide for git-lfs setup
jjokella Sep 18, 2026
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46 changes: 43 additions & 3 deletions docs/users_guide/introduction/quick_start.md
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Expand Up @@ -67,13 +67,53 @@ cd TSMP2
3. Set up a simulation experiment.

```sh
cd /share
cd ..
git clone https://icg4geo.icg.kfa-juelich.de/ExternalReposPublic/tsmp2-static-files/extpar_eclm_wuestebach_sp.git
cd extpar_eclm_wuestebach_sp/static.resources
generate_wtb_namelists.sh 1x1_wuestebach
./generate_wtb_namelists.sh 1x1_wuestebach
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# Download large files (possibly git-lfs needs to be configured)
cd ..
git lfs install
git lfs pull
```

4. Run eCLM.
4a. (ONLY on JSC systems) Set up the run directory with symlinks and a
job script.

```sh
cd 1x1_wuestebach

# Symlink the eCLM executable and the JSC environment file
ln -s ../../../TSMP2/bin/JUWELS_eCLM/bin/eclm.exe eclm.exe
ln -s ../../../TSMP2/bin/JUWELS_eCLM/jsc.2025.intel.psmpi loadenvs

cat > jobscript.slurm << 'EOF'
#!/usr/bin/env bash
#SBATCH --job-name=1x1_wuestebach
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=48
#SBATCH --account=jibg36
#SBATCH --partition=batch
#SBATCH --time=0:30:00
#SBATCH --output=logs/%j.eclm.1x1_wuestebach.out
#SBATCH --error=logs/%j.eclm.1x1_wuestebach.err

# Load environment
source loadenvs

# Run model
srun -n $SLURM_NTASKS eclm.exe
EOF
```

Run eCLM:
```sh
# On JSC systems (submit via Slurm):
sbatch jobscript.slurm
```

4b. (GENERIC HPC) Run eCLM.

```sh
cd 1x1_wuestebach
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