Issues

• Cell barcode IDs for processed ATAC SummarizedExperiment objects

  GreenleafLab/MPAL-Single-Cell-2019#28 · Filter by author andrewjkwok opened on Oct 14, 2021

• scRNA cell type annotation marker

  GreenleafLab/MPAL-Single-Cell-2019#27 · Filter by author dannihong opened on Oct 11, 2021
  1

• Label transfer from RNA to ATAC

  GreenleafLab/MPAL-Single-Cell-2019#26 · Filter by author RegnerM2015 opened on Apr 7, 2021

• Antibody features in raw 10x Bam Files provided in the repository link

  GreenleafLab/MPAL-Single-Cell-2019#25 · Filter by author GAgafencu opened on Jan 8, 2021
  1

• Cannot find the definition of the function "keepFilteredChromosomes"

  GreenleafLab/MPAL-Single-Cell-2019#24 · Filter by author YangLi-Bio opened on Nov 23, 2020

• Error in lsiProjection

  GreenleafLab/MPAL-Single-Cell-2019#23 · Filter by author pbrazda opened on Aug 24, 2020

• nn_index in scRNA-Projection-UMAP.zip is empty or not compatible with uwot 0.1.8 and RcppAnnoy 0.0.16

  GreenleafLab/MPAL-Single-Cell-2019#22 · Filter by author wangmeijiao opened on Aug 24, 2020
  1

• About the reference genome used in scRNA

  GreenleafLab/MPAL-Single-Cell-2019#21 · Filter by author hahia opened on Aug 8, 2020

• LASSO penalty issue in customized gene activity score calculation

  GreenleafLab/MPAL-Single-Cell-2019#19 · Filter by author wangmeijiao opened on Jun 11, 2020

• Runtime of getting UMAP reductions

  GreenleafLab/MPAL-Single-Cell-2019#18 · Filter by author mohit1997 opened on May 4, 2020
  4

• CLR assay missing in scADT-All-Hematopoiesis-MPAL-191120.rds

  GreenleafLab/MPAL-Single-Cell-2019#17 · Filter by author rargelaguet opened on Apr 17, 2020
  1

• How did you compose those pretty scentific figures ?

  GreenleafLab/MPAL-Single-Cell-2019#15 · Filter by author wangmeijiao opened on Apr 12, 2020
  4

• Where is the bam file for scATAC-seq data?

  GreenleafLab/MPAL-Single-Cell-2019#14 · Filter by author eravza opened on Mar 22, 2020
  8

• Code for creating differentiual_Summary objects is missing

  GreenleafLab/MPAL-Single-Cell-2019#11 · Filter by author CSBioAzim opened on Feb 14, 2020
  1

• optimizeLSI for scRNA-seq gives Error in if (n < 0L) max(length(x) + n, 0L) else min(n, length(x)) :

  GreenleafLab/MPAL-Single-Cell-2019#10 · Filter by author CSBioAzim opened on Feb 2, 2020

• AML cells LSI projection and reclassification

  GreenleafLab/MPAL-Single-Cell-2019#6 · Filter by author eldadshulman opened on Dec 17, 2019
  2