{2026.06}[GCC/15.2.0,GCCcore/15.2.0] BEDTools 2.31.1, SAMtools 1.23.1, GATK 4.6.2.0

[HaoZeke]

Adds BEDTools-2.31.1-GCC-15.2.0, SAMtools-1.23.1-GCC-15.2.0, GATK-4.6.2.0-GCCcore-15.2.0-Java-25 to 2026.06. Recipes after the EasyBuild 5.4.0 release are pinned with from-commit to their merge commit on develop.

[HaoZeke]

bot: build repo:eessi.io-2026.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen4
bot: build repo:eessi.io-2026.06-software instance:eessi-bot-mc-aws for:arch=aarch64/generic

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2026.06-software
Building on: amd-zen4
Building for: x86_64/amd/zen4
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1773/206282

date	job status	comment
Oct 11 18:35:49 UTC 2026	submitted	job id 206282 awaits release by job manager
Oct 11 18:36:30 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 11 18:45:23 UTC 2026	running	job 206282 is running
Oct 11 18:53:41 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-206282.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2026.06-software-linux-x86_64-amd-zen4-17917446580.tar.zst size: 827 MiB (868051271 bytes) entries: 2250 modules under 2026.06/software/linux/x86_64/amd/zen4/modules/all BEDTools/2.31.1-GCC-15.2.0.lua GATK/4.6.2.0-GCCcore-15.2.0-Java-25.lua Java/25.36.lua Java/.modulerc.lua SAMtools/1.23.1-GCC-15.2.0.lua software under 2026.06/software/linux/x86_64/amd/zen4/software BEDTools/2.31.1-GCC-15.2.0 GATK/4.6.2.0-GCCcore-15.2.0-Java-25 Java/25.36 SAMtools/1.23.1-GCC-15.2.0 reprod directories under 2026.06/software/linux/x86_64/amd/zen4/reprod BEDTools/2.31.1-GCC-15.2.0/20261011_184630UTC GATK/4.6.2.0-GCCcore-15.2.0-Java-25/20261011_184836UTC Java/25.36/20261011_184822UTC SAMtools/1.23.1-GCC-15.2.0/20261011_184727UTC other under 2026.06/software/linux/x86_64/amd/zen4 no other files in tarball
Oct 11 18:53:41 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 expected failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-206282.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2026.06-software
Building on: generic
Building for: aarch64/generic
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1773/206283

date	job status	comment
Oct 11 18:35:55 UTC 2026	submitted	job id 206283 awaits release by job manager
Oct 11 18:36:21 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 11 18:41:56 UTC 2026	running	job 206283 is running
Oct 11 18:51:17 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-206283.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2026.06-software-linux-aarch64-generic-17917445660.tar.zst size: 826 MiB (866413237 bytes) entries: 2249 modules under 2026.06/software/linux/aarch64/generic/modules/all BEDTools/2.31.1-GCC-15.2.0.lua GATK/4.6.2.0-GCCcore-15.2.0-Java-25.lua Java/25.36.lua Java/.modulerc.lua SAMtools/1.23.1-GCC-15.2.0.lua software under 2026.06/software/linux/aarch64/generic/software BEDTools/2.31.1-GCC-15.2.0 GATK/4.6.2.0-GCCcore-15.2.0-Java-25 Java/25.36 SAMtools/1.23.1-GCC-15.2.0 reprod directories under 2026.06/software/linux/aarch64/generic/reprod BEDTools/2.31.1-GCC-15.2.0/20261011_184409UTC GATK/4.6.2.0-GCCcore-15.2.0-Java-25/20261011_184603UTC Java/25.36/20261011_184546UTC SAMtools/1.23.1-GCC-15.2.0/20261011_184456UTC other under 2026.06/software/linux/aarch64/generic no other files in tarball
Oct 11 18:51:17 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 expected failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-206283.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case