Issues

• improvements to csv plugin

  CountESS-Project/CountESS#60 · Filter by author nickzoic opened on Jun 10, 2026

• nix build is broken

  CountESS-Project/CountESS#59 · Filter by author nickzoic opened on May 13, 2026

• variant classifier fix for delins

  CountESS-Project/CountESS#58 · Filter by author nickzoic opened on May 12, 2026

• random effects model for combining barcodes

  CountESS-Project/CountESS#56 · Filter by author nickzoic opened on Apr 30, 2026

• Expression Parser

  CountESS-Project/CountESS#54 · Filter by author nickzoic opened on Mar 13, 2026
  2

• FASTQ sorting plugin

  enhancement
  CountESS-Project/CountESS#53 · Filter by author afrubin opened on Mar 12, 2026 · Preprint
  1

• Log ratio workflow

  workflow
  CountESS-Project/CountESS#52 · Filter by author afrubin opened on Mar 12, 2026 · Preprint
  2

• Exemplar workflows

  workflow
  CountESS-Project/CountESS#49 · Filter by author afrubin opened on Mar 12, 2026 · Preprint

• VAMP-seq with replicates

  workflow
  CountESS-Project/CountESS#45 · Filter by author afrubin opened on Nov 21, 2025

• Always Be Saving

  enhancement
  CountESS-Project/CountESS#42 · Filter by author nickzoic opened on Oct 25, 2024 · Preprint
  3

• gui logger improvements

  enhancement
  CountESS-Project/CountESS#41 · Filter by author nickzoic opened on Apr 16, 2024 · Preprint
  1

• MapReduceFinalizePlugin class

  enhancement
  CountESS-Project/CountESS#40 · Filter by author nickzoic opened on Apr 8, 2024

• Consider replacing file dialogs

  enhancement
  CountESS-Project/CountESS#36 · Filter by author nickzoic opened on Apr 2, 2024
  1

• Multiplatform testing

  testing
  CountESS-Project/CountESS#35 · Filter by author nickzoic opened on Mar 21, 2024
  2

• Multiple Inputs & Outputs

  enhancement
  CountESS-Project/CountESS#30 · Filter by author nickzoic opened on Mar 18, 2024
  3

• consider changing .INI files to .TOML

  enhancement
  CountESS-Project/CountESS#28 · Filter by author nickzoic opened on Feb 13, 2024 · Preprint
  2

• Save Config behaviour

  enhancement
  CountESS-Project/CountESS#26 · Filter by author nickzoic opened on Sep 8, 2023 · Preprint
  1

• Graph Tidying

  future work
  CountESS-Project/CountESS#24 · Filter by author nickzoic opened on Jun 28, 2023
  2

• Multiple Windows

  future work
  CountESS-Project/CountESS#22 · Filter by author nickzoic opened on Jun 14, 2023
  1

• Rewrite the dataflow graph code

  future work
  CountESS-Project/CountESS#19 · Filter by author nickzoic opened on May 29, 2023

• Combining Plugins

  enhancementfuture work
  CountESS-Project/CountESS#18 · Filter by author nickzoic opened on May 16, 2023

• calculating file hashes is far too slow.

  optimisation
  CountESS-Project/CountESS#16 · Filter by author nickzoic opened on May 4, 2023 · Preprint
  3

• crashing on invalid ini file load

  bug
  CountESS-Project/CountESS#15 · Filter by author nickzoic opened on Apr 19, 2023
  1

• Support for loading files wrapped in .gz and .bz2 (also file metadata)

  enhancement
  CountESS-Project/CountESS#14 · Filter by author nickzoic opened on Apr 12, 2023 · Preprint
  2