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4 changes: 4 additions & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -22,3 +22,7 @@
^\.jules(/.*)?$
^\.trivyignore\.yaml$
^trivy\.yaml$
^\.semgrepignore$
^test_dummy\.R$
^test_validation\.R$
^\.markdownlint-cli2\.jsonc$
5 changes: 5 additions & 0 deletions .jules/sentinel.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,3 +2,8 @@
**Vulnerability:** Unvalidated inputs passed to `if()` statements can cause process crashes (`condition has length > 1`) or unexpected coercion vulnerabilities.
**Learning:** In R, optional boolean parameters that default to `NULL` should be validated using explicit runtime type validation (e.g., `if (!is.null(flag) && (!is.logical(flag) || length(flag) != 1 || is.na(flag)))`).
**Prevention:** Always implement explicit runtime type validation for optional boolean parameters.

## 2024-07-23 - Strict Numeric Input Validation for `readline()`
**Vulnerability:** In R scripts, validating interactive `readline()` numeric inputs against unbounded digit classes (e.g., `^[0-9]+$`) rather than strict exact expected values (e.g., `^[12]$`) can cause integer overflow coercion vulnerabilities. Excessively large numeric strings will pass the regex check but evaluate to `NA` when coerced with `as.integer()`, causing downstream crashes or unexpected state.
**Learning:** Bounded inputs must be strictly validated for the specific range expected rather than broadly accepting any number of digits, as unbounded strings bypass size limitations.
**Prevention:** Always implement strict matching (e.g., `^[12]$`) against exact expected values for menu inputs rather than unbounded digit classes.
8 changes: 8 additions & 0 deletions .markdownlint-cli2.jsonc
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
{
"config": {
"MD013": false,
"MD022": false,
"MD041": false
},
"ignores": ["packrat/**"]
}
6 changes: 3 additions & 3 deletions R/aFIPC.R
Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,7 @@ autoFIPC <-
}
for (attempt in seq_len(3)) {
n <- readline(prompt = "Is it correct? (1: Yes 2: No) : ")
if (grepl("^[0-9]+$", n)) {
if (grepl("^[12]$", n)) {
return(as.integer(n))
}
}
Expand Down Expand Up @@ -171,7 +171,7 @@ autoFIPC <-
readline(
prompt = "Do you want to use default BILOG-MG priors for oldform Data? (1: Yes 2: No) : "
)
if (grepl("^[0-9]+$", n)) {
if (grepl("^[12]$", n)) {
return(as.integer(n))
}
}
Expand Down Expand Up @@ -390,7 +390,7 @@ autoFIPC <-
readline(
prompt = "Do you want to use default BILOG-MG priors for newform Data? (1: Yes 2: No) : "
)
if (grepl("^[0-9]+$", n)) {
if (grepl("^[12]$", n)) {
return(as.integer(n))
}
}
Expand Down
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