KnoxSBOL - An API for Conversion between GOLDBAR and SBOL

Quickstart

Docker Instructions

1. Install Docker Desktop
2. Clone this repository
3. run docker build -t knox-sbol . in the root of this repo
4. run docker run -p 8020:8020 knox-sbol
5. Open FastAPI Docs at http://localhost:8020/docs

Non-Docker Instructions

1. Clone this repository
2. Install dependencies pip install -r requirements.txt
3. Run uvicorn app.main:api --reload --host 127.0.0.1 --port 8020 in the root directory of this repo
4. Open FastAPI Docs at http://localhost:8020/docs

Use with Knox or Standalone

Manuscripts

Nicholas Roehner, James Roberts, Andrei Lapets, Dany Gould, Vidya Akavoor, Lucy Qin, D. Benjamin Gordon, Christopher Voigt, and Douglas Densmore. GOLDBAR: A Framework for Combinatorial Biological Design. ACS Synthetic Biology Article ASAP (2024). DOI: https://pubs.acs.org/doi/full/10.1021/acssynbio.4c00296

Webpage

https://www.cidarlab.org/knox