DRAFT - Fix missing GDAL and dependencies - #2

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newmana wants to merge 29 commits into

andrew_n_hovernet

Commits on Apr 19, 2024

Fix missing GDAL and dependencies
newmana
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855b69a
Add how to create conda environment
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28305e9

Commits on Apr 22, 2024

Test.
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b5bd0dd
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5369908

Commits on Apr 23, 2024

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b473167
Fix for ICU.
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5139fa6
Fix deprecation warning.
newmana
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9497262

Commits on Apr 24, 2024

Add how to generate a transformation matrix.
newmana
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867b5f1
Make .py files executable and add alignment script and instructions
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09c6e34
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e8244e3
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61b455d
Improve instructions
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82dad4f
Use new API
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f4341ca
Use new API for spatialdata
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d2531a8
Reformat.
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1ecd1be
Display remove vs total files and improve logic
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b1d22ad
Show previous spatialdata api usage
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a604a41
Show previous spatialdata api usage
newmana
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ede45a9

Commits on Apr 25, 2024

Commits on Apr 26, 2024

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newmana
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c56a012
Fix formatting.
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d202b31
Working
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5b69b0d
Merge branch 'andrew_n_hovernet' of github.com:BiomedicalMachineLearning/STimage into andrew_n_hovernet
newmana
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1707e81
Cleanup and get pipeline for creating masks into notebook
newmana
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9661716