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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 13

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 22

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 14

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ComputationalReviewTemplate ComputationalReviewTemplate Public template

    A repository to start computational reviews with AI

    JavaScript 13 3

Repositories

Showing 10 of 729 repositories
  • aind-pophys-metadata Public
    AllenNeuralDynamics/aind-pophys-metadata's past year of commit activity
    Python 0 MIT 0 0 4 Updated Nov 9, 2026
  • zombie Public
    AllenNeuralDynamics/zombie's past year of commit activity
    JavaScript 0 MIT 1 24 0 Updated Nov 9, 2026
  • zephyr-manuscript Public
    AllenNeuralDynamics/zephyr-manuscript's past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 9, 2026
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema's past year of commit activity
    Python 34 MIT 22 1 2 Updated Nov 9, 2026
  • aind-pophys-pipeline Public

    2P planar optical physiology processing pipeline

    AllenNeuralDynamics/aind-pophys-pipeline's past year of commit activity
    Nextflow 0 MIT 0 5 0 Updated Nov 9, 2026
  • GIAnT-MATLAB Public

    Glutamate Imaging Analysis Toolbox, MATLAB implementation

    AllenNeuralDynamics/GIAnT-MATLAB's past year of commit activity
    MATLAB 3 MIT 3 5 5 Updated Nov 9, 2026
  • Aind.Behavior.Pirouette.Analysis Public

    Code for processing and analyzing chronic ephys and behavior data

    AllenNeuralDynamics/Aind.Behavior.Pirouette.Analysis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 9, 2026
  • nmcp-deploy Public
    AllenNeuralDynamics/nmcp-deploy's past year of commit activity
    Shell 0 0 0 0 Updated Nov 9, 2026
  • aind-dynamic-foraging-bfm-atlas Public

    Interactive, provenance-traced browser for aind-dynamic-foraging-bfm-studies reports

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-atlas's past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 9, 2026
  • aind-dynamic-foraging-bfm-studies Public

    Scientific studies of the dynamic-foraging-bfm stack: one folder per question, with launch records, frozen inputs, analysis and reports. Extracted with full history from aind-dynamic-foraging-bfm-dispatcher.

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-studies's past year of commit activity
    Python 0 MIT 0 16 5 Updated Nov 9, 2026
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