Skip to content

Create a gold standard example vignette #45

Description

@cmirzayi

Using a condition with plenty of signatures (i.e. at least 30), conduct a basic analysis of those signatures using the methods established in the other vignettes. This should include:

  1. Downloading the data from BugSigDB
  2. Filtering of the data to select relevant signatures and remove similar/duplicate signatures
  3. Description of the studies
  4. Description of the taxa
  5. Basic statistical tests
  6. Monte Carlo simulation to calculate critical N
  7. Heatmaps and dendrograms

Do not reinvent the wheel! Use existing functions in bugSigSimple and draw heavily on previously written vignettes.

Metadata

Metadata

Assignees

Labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions