From 7203261bcbfd93d4ccc86f08e7981dc5f6f39ad1 Mon Sep 17 00:00:00 2001 From: Yan Wong Date: Mon, 27 Apr 2026 14:17:07 +0100 Subject: [PATCH] Minor typos in completing_forward_sims --- completing_forward_sims.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/completing_forward_sims.md b/completing_forward_sims.md index 9f8d6fb2..78e19e75 100644 --- a/completing_forward_sims.md +++ b/completing_forward_sims.md @@ -11,7 +11,7 @@ kernelspec: (sec_completing_forward_simulations)= -# Recapitation: completing a forward simulation +# Recapitating a forward simulation The ``msprime`` simulator generates tree sequences using the backward-in-time coalescent model. But it is also possible to output tree sequences @@ -178,7 +178,7 @@ they may cause problems: sequence, having these unary edges and redundant nodes will slightly inflate the values. 2. If you are computing the overall tree "height" by taking the time of the - root node, you may overestimate the height because there is a unary edge + root node, you may overestimate the height if there is a unary edge above the "real" root (this would happen if one of the trees had already coalesced in the forward-time simulation). @@ -188,7 +188,7 @@ computed tree sequence which is easily done using the ```{code-cell} ipython3 final_ts = coalesced_ts.simplify() -coalesced_ts.draw_svg() +final_ts.draw_svg() ``` This final tree sequence is topologically identical to the original tree sequence,