Copykat_python/pyproject.toml at main · navinlabcode/Copykat_python · GitHub

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[build-system]
requires = ["setuptools>=64", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "copykat-py"
version = "1.0.0"
description = "Python implementation of CopyKAT: Copynumber Karyotyping of Aneuploid Tumors from scRNA-seq data"
readme = "README.md"
license = {text = "GPL-2.0"}
requires-python = ">=3.9"
dependencies = [
    "numpy>=1.21",
    "scipy>=1.7",
    "pandas>=1.3",
    "anndata>=0.10",
    "scikit-learn>=1.0",
    "matplotlib>=3.4",
    "seaborn>=0.11",
    "joblib>=1.1",
    "tqdm>=4.62",
    "numba>=0.56",
    "fastcluster>=1.3.0",
]

[project.optional-dependencies]
large-datasets = ["fastcluster>=1.3.0"]
all = ["fastcluster>=1.3.0"]

[project.scripts]
copykat-py = "copykat_py.cli:main"
copykat_matrix = "copykat_py.cli:matrix_main"
copykat-py-plot = "copykat_py.cli:plot_main"

[tool.setuptools.packages.find]
include = ["copykat_py*"]

[tool.setuptools.package-data]
"copykat_py" = ["data/*.csv", "data/*.mtx", "data/*.txt"]