For anyone looking for an updated graphiql template that supports request headers, this is a slightly tweaked version (template variables have been changed to match the variables passed in by flask-graphql), taken mostly from graphql-server.

TEMPLATE = """<!--
The request to this GraphQL server provided the header "Accept: text/html"
and as a result has been presented GraphiQL - an in-browser IDE for
exploring GraphQL.
If you wish to receive JSON, provide the header "Accept: application/json" or
add "&raw" to the end of the URL within a browser.
-->
<!DOCTYPE html>
<html>
<head>
  <meta charset="utf-8" />
  <title>{{graphiql_html_title}}</title>
  <meta name="robots" content="noindex" />
  <meta name="referrer" content="origin" />
  <meta name="viewport" content="width=device-width, initial-scale=1" />
  <style>
    body {
      margin: 0;
      overflow: hidden;
    }
    #graphiql {
      height: 100vh;
    }
  </style>
  <link href="//cdn.jsdelivr.net/npm/graphiql@{{graphiql_version}}/graphiql.css" rel="stylesheet" />
  <script src="//cdn.jsdelivr.net/npm/promise-polyfill@8.1.3/dist/polyfill.min.js"></script>
  <script src="//cdn.jsdelivr.net/npm/unfetch@4.1.0/dist/unfetch.umd.js"></script>
  <script src="//cdn.jsdelivr.net/npm/react@16.13.1/umd/react.production.min.js"></script>
  <script src="//cdn.jsdelivr.net/npm/react-dom@16.13.1/umd/react-dom.production.min.js"></script>
  <script src="//cdn.jsdelivr.net/npm/graphiql@{{graphiql_version}}/graphiql.min.js"></script>
  <script src="//cdn.jsdelivr.net/npm/subscriptions-transport-ws@0.9.16/browser/client.js"></script>
  <script src="//cdn.jsdelivr.net/npm/graphiql-subscriptions-fetcher@0.0.2/browser/client.js"></script>
</head>
<body>
  <div id="graphiql">Loading...</div>
  <script>
    // Collect the URL parameters
    var parameters = {};
    window.location.search.substr(1).split('&').forEach(function (entry) {
      var eq = entry.indexOf('=');
      if (eq >= 0) {
        parameters[decodeURIComponent(entry.slice(0, eq))] =
          decodeURIComponent(entry.slice(eq + 1));
      }
    });
    // Produce a Location query string from a parameter object.
    function locationQuery(params) {
      return '?' + Object.keys(params).filter(function (key) {
        return Boolean(params[key]);
      }).map(function (key) {
        return encodeURIComponent(key) + '=' +
          encodeURIComponent(params[key]);
      }).join('&');
    }
    // Derive a fetch URL from the current URL, sans the GraphQL parameters.
    var graphqlParamNames = {
      query: true,
      variables: true,
      operationName: true
    };
    var otherParams = {};
    for (var k in parameters) {
      if (parameters.hasOwnProperty(k) && graphqlParamNames[k] !== true) {
        otherParams[k] = parameters[k];
      }
    }
    // Configure the subscription client
    let subscriptionsFetcher = null;
    var fetchURL = locationQuery(otherParams);
    // Defines a GraphQL fetcher using the fetch API.
    function graphQLFetcher(graphQLParams, opts) {
      return fetch(fetchURL, {
        method: 'post',
        headers: Object.assign(
          {
            'Accept': 'application/json',
            'Content-Type': 'application/json'
          },
          opts && opts.headers,
        ),
        body: JSON.stringify(graphQLParams),
        credentials: 'include',
      }).then(function (response) {
        return response.json();
      });
    }
    // When the query and variables string is edited, update the URL bar so
    // that it can be easily shared.
    function onEditQuery(newQuery) {
      parameters.query = newQuery;
      updateURL();
    }
    function onEditVariables(newVariables) {
      parameters.variables = newVariables;
      updateURL();
    }
    function onEditHeaders(newHeaders) {
      parameters.headers = newHeaders;
      updateURL();
    }
    function onEditOperationName(newOperationName) {
      parameters.operationName = newOperationName;
      updateURL();
    }
    function updateURL() {
      history.replaceState(null, null, locationQuery(parameters));
    }
    // Render <GraphiQL /> into the body.
    ReactDOM.render(
      React.createElement(GraphiQL, {
        fetcher: subscriptionsFetcher || graphQLFetcher,
        onEditQuery: onEditQuery,
        onEditVariables: onEditVariables,
        onEditHeaders: onEditHeaders,
        onEditOperationName: onEditOperationName,

        query: {{ params.query|tojson }},
        response: {{ result|tojson }},
        variables: {{ params.variables|tojson }},
        operationName: {{ params.operation_name|tojson }},

        headers: {{params.headers or ''|tojson}},
        headerEditorEnabled: true,
        shouldPersistHeaders: true,
      }),
      document.getElementById('graphiql')
    );
  </script>
</body>
</html>"""

Header support in graphiQL interface #80

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