From 40b0139fa80df4d9639ede32b036b97715188840 Mon Sep 17 00:00:00 2001 From: Tony Wu Date: Fri, 22 May 2026 11:35:08 -0400 Subject: [PATCH] fix(maxquant): Fix MaxQuant converter w.r.t. recent MaxQ changes --- R/clean_MaxQuant.R | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/R/clean_MaxQuant.R b/R/clean_MaxQuant.R index 3c3784df..2c11040c 100644 --- a/R/clean_MaxQuant.R +++ b/R/clean_MaxQuant.R @@ -17,12 +17,12 @@ mq_input = getInputFile(msstats_object, "evidence") mq_pg = getInputFile(msstats_object, "protein_groups") - filter_cols = c("Contaminant", "Potentialcontaminant", "Reverse") - msg = paste("** + Contaminant, + Reverse, + Potential.contaminant", + filter_cols = c("Contaminant", "Potentialcontaminant", "Reverse", "Decoy") + msg = paste("** + Contaminant, + Reverse, + Decoy, + Potential.contaminant", "proteins are removed.") if (remove_by_site) { filter_cols = c(filter_cols, "Onlyidentifiedbysite") - msg = paste("** + Contaminant, + Reverse, + Potential.contaminant,", + msg = paste("** + Contaminant, + Reverse, + Decoy, + Potential.contaminant,", "+ Only.identified.by.site proteins are removed.") }