diff --git a/packages/api/package.json b/packages/api/package.json
index 8ba7acb..2513751 100644
--- a/packages/api/package.json
+++ b/packages/api/package.json
@@ -26,7 +26,7 @@
     "@codegraph/logger": "workspace:*",
     "@codegraph/types": "workspace:*",
     "@hono/node-server": "^1.19.14",
-    "hono": "^4.12.23"
+    "hono": "^4.13.5"
   },
   "devDependencies": {
     "@types/node": "^22.19.19",
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index f3969da..d19ce1c 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -287,10 +287,10 @@ importers:
         version: link:../types
       '@hono/node-server':
         specifier: 1.19.15
-        version: 1.19.15(hono@4.12.34)
+        version: 1.19.15(hono@4.13.5)
       hono:
-        specifier: 4.12.34
-        version: 4.12.34
+        specifier: ^4.13.5
+        version: 4.13.5
     devDependencies:
       '@types/node':
         specifier: ^22.19.19
@@ -4378,6 +4378,7 @@ packages:
   eslint@9.39.5:
     resolution: {integrity: sha512-DgZS62aPLXKlnxILS/AYCoRvHaZeXceIzlXPkkGGzJWSow1aEk0lbTlxUSlyjC8jcaKxAdOnTDz+o1JFSBsyjw==}
     engines: {node: ^18.18.0 || ^20.9.0 || >=21.1.0}
+    deprecated: This version is no longer supported. Please see https://eslint.org/version-support for other options.
     hasBin: true
     peerDependencies:
       jiti: '*'
@@ -4750,6 +4751,10 @@ packages:
     resolution: {integrity: sha512-GqXJqY/xJkJmuloTrnV1ZEXG3fqte+VjkUqoRNZXcrUidiUOP4fMSIHHY4tsqZBK++kVyWmt/AAfSUuy57/eSA==}
     engines: {node: '>=16.9.0'}
 
+  hono@4.13.5:
+    resolution: {integrity: sha512-O6+/eCYRkzzzy0rPWwKLiGBR1nFuUPZynnwjxN1MBA62NNqbT0wQEzQyK2gSO5yDIDB336sXQleAhOHrzlYyKw==}
+    engines: {node: '>=16.9.0'}
+
   html-void-elements@3.0.0:
     resolution: {integrity: sha512-bEqo66MRXsUGxWHV5IP0PUiAWwoEjba4VCzg0LjFJBpchPaTfyfCKTG6bc5F8ucKec3q5y6qOdGyYTSBEvhCrg==}
 
@@ -7323,6 +7328,10 @@ snapshots:
     dependencies:
       hono: 4.12.34
 
+  '@hono/node-server@1.19.15(hono@4.13.5)':
+    dependencies:
+      hono: 4.13.5
+
   '@hookform/resolvers@3.10.0(react-hook-form@7.76.1(react@19.2.8))':
     dependencies:
       react-hook-form: 7.76.1(react@19.2.8)
@@ -10001,7 +10010,7 @@ snapshots:
       '@next/eslint-plugin-next': 16.3.1(eslint@9.39.5(jiti@2.7.0))
       eslint: 9.39.5(jiti@2.7.0)
       eslint-import-resolver-node: 0.3.10
-      eslint-import-resolver-typescript: 3.10.1(eslint-plugin-import@2.32.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0))
+      eslint-import-resolver-typescript: 3.10.1(eslint-plugin-import@2.32.0)(eslint@9.39.5(jiti@2.7.0))
       eslint-plugin-import: 2.32.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint-import-resolver-typescript@3.10.1)(eslint@9.39.5(jiti@2.7.0))
       eslint-plugin-jsx-a11y: 6.10.2(eslint@9.39.5(jiti@2.7.0))
       eslint-plugin-react: 7.37.5(eslint@9.39.5(jiti@2.7.0))
@@ -10024,7 +10033,7 @@ snapshots:
     transitivePeerDependencies:
       - supports-color
 
-  eslint-import-resolver-typescript@3.10.1(eslint-plugin-import@2.32.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0)):
+  eslint-import-resolver-typescript@3.10.1(eslint-plugin-import@2.32.0)(eslint@9.39.5(jiti@2.7.0)):
     dependencies:
       '@nolyfill/is-core-module': 1.0.39
       debug: 4.4.3
@@ -10039,14 +10048,14 @@ snapshots:
     transitivePeerDependencies:
       - supports-color
 
-  eslint-module-utils@2.14.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint-import-resolver-node@0.3.10)(eslint-import-resolver-typescript@3.10.1(eslint-plugin-import@2.32.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0)):
+  eslint-module-utils@2.14.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint-import-resolver-node@0.3.10)(eslint-import-resolver-typescript@3.10.1)(eslint@9.39.5(jiti@2.7.0)):
     dependencies:
       debug: 3.2.7
     optionalDependencies:
       '@typescript-eslint/parser': 8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3)
       eslint: 9.39.5(jiti@2.7.0)
       eslint-import-resolver-node: 0.3.10
-      eslint-import-resolver-typescript: 3.10.1(eslint-plugin-import@2.32.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0))
+      eslint-import-resolver-typescript: 3.10.1(eslint-plugin-import@2.32.0)(eslint@9.39.5(jiti@2.7.0))
     transitivePeerDependencies:
       - supports-color
 
@@ -10061,7 +10070,7 @@ snapshots:
       doctrine: 2.1.0
       eslint: 9.39.5(jiti@2.7.0)
       eslint-import-resolver-node: 0.3.10
-      eslint-module-utils: 2.14.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint-import-resolver-node@0.3.10)(eslint-import-resolver-typescript@3.10.1(eslint-plugin-import@2.32.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0)))(eslint@9.39.5(jiti@2.7.0))
+      eslint-module-utils: 2.14.0(@typescript-eslint/parser@8.67.0(eslint@9.39.5(jiti@2.7.0))(typescript@5.7.3))(eslint-import-resolver-node@0.3.10)(eslint-import-resolver-typescript@3.10.1)(eslint@9.39.5(jiti@2.7.0))
       hasown: 2.0.4
       is-core-module: 2.16.2
       is-glob: 4.0.3
@@ -10607,6 +10616,8 @@ snapshots:
 
   hono@4.12.34: {}
 
+  hono@4.13.5: {}
+
   html-void-elements@3.0.0: {}
 
   htmlparser2@10.1.0: