Issues

• Removing batch bias

  NVIDIA-Genomics-Research/AtacWorks#252 · Filter by author liqing9102 opened on Jul 23, 2024

• PermissionError: [Errno 13] Permission denied: 'bedGraphToBigWig'

  NVIDIA-Genomics-Research/AtacWorks#250 · Filter by author Qiayi0815 opened on May 22, 2023

• Could not find a version that satisfies the requirement torchvision==0.3.0 (from atacworks)

  NVIDIA-Genomics-Research/AtacWorks#249 · Filter by author skr3178 opened on Dec 25, 2022

• Error running atacworks train

  NVIDIA-Genomics-Research/AtacWorks#248 · Filter by author albertdyu opened on May 22, 2022
  2

• Tutorial 1 is recursive?

  NVIDIA-Genomics-Research/AtacWorks#247 · Filter by author albertdyu opened on May 22, 2022
  1

• ConnectionResetError: [Errno 104] Connection reset by peer

  NVIDIA-Genomics-Research/AtacWorks#246 · Filter by author hhvu0102 opened on Dec 16, 2021

• error message needing help

  NVIDIA-Genomics-Research/AtacWorks#244 · Filter by author elffairy90 opened on Jul 18, 2021
  1

• Atacworks stuck at "waiting for writter to finish..."

  NVIDIA-Genomics-Research/AtacWorks#237 · Filter by author rochevin opened on Apr 22, 2021
  3

• Pretrained model for bulk low-quality data

  NVIDIA-Genomics-Research/AtacWorks#236 · Filter by author avantikalal opened on Apr 5, 2021
  6

• What does the 6 kb mean?

  NVIDIA-Genomics-Research/AtacWorks#235 · Filter by author YichaoOU opened on Mar 26, 2021
  3

  

• error in pip install -r requirments.txt

  NVIDIA-Genomics-Research/AtacWorks#233 · Filter by author elffairy90 opened on Mar 21, 2021
  1

  

• Update atacworks dependencies to latest stable versions

  NVIDIA-Genomics-Research/AtacWorks#223 · Filter by author ntadimeti opened on Dec 8, 2020
  

• pyYaml outputs None as "null". atacworks does not recognize null.

  NVIDIA-Genomics-Research/AtacWorks#199 · Filter by author ntadimeti opened on Jul 27, 2020
  

• new version of bigwig files for pre-trained models to contain ALL chroms

  NVIDIA-Genomics-Research/AtacWorks#198 · Filter by author ntadimeti opened on Jul 27, 2020
  

• Encode intervals, sizes data into h5 files itself.

  enhancement
  NVIDIA-Genomics-Research/AtacWorks#183 · Filter by author ntadimeti opened on Jul 13, 2020
  

• Add set of standard config files

  NVIDIA-Genomics-Research/AtacWorks#170 · Filter by author avantikalal opened on Jun 12, 2020

• AWS AMI

  enhancement
  NVIDIA-Genomics-Research/AtacWorks#162 · Filter by author ntadimeti opened on Jun 1, 2020
  

• enable automated docker image upload with new merges to master

  enhancement
  NVIDIA-Genomics-Research/AtacWorks#159 · Filter by author ntadimeti opened on May 29, 2020
  1

  

• Fix resume functionality in training.

  NVIDIA-Genomics-Research/AtacWorks#130 · Filter by author ntadimeti opened on Feb 27, 2020
  

• Fix to include ends of chromosomes.

  bug
  NVIDIA-Genomics-Research/AtacWorks#114 · Filter by author avantikalal opened on Feb 6, 2020
  2

  

• Add evaluation script for quality enhancement use case

  NVIDIA-Genomics-Research/AtacWorks#61 · Filter by author avantikalal opened on Nov 15, 2019
  1

  

• Update metrics to support both numpy and torch tensor inputs

  NVIDIA-Genomics-Research/AtacWorks#6 · Filter by author tijyojwad opened on Sep 3, 2019
  3