diff --git a/docs/source/acquire_upload/index.md b/docs/source/acquire_upload/index.md index f98706e..8d465df 100644 --- a/docs/source/acquire_upload/index.md +++ b/docs/source/acquire_upload/index.md @@ -1,7 +1,3 @@ ---- -orphan: true ---- - # Acquire, upload & process ## I want to... diff --git a/docs/source/explore_analyze/find_data.md b/docs/source/explore_analyze/find_data.md index 323bb8d..8b817d1 100644 --- a/docs/source/explore_analyze/find_data.md +++ b/docs/source/explore_analyze/find_data.md @@ -97,10 +97,3 @@ records = client.retrieve_docdb_records( ``` More details about DocDB queries can be found in the [aind-data-access-api#querying-metadata documentation](https://aind-data-access-api.readthedocs.io/en/latest/ExamplesDocDBRestApi.html#querying-metadata) - -## Dashboards - -We are expanding the number of platform and project dashboards based on V2 metadata over time. We currently host: - -- [data portal](https://data.allenneuraldynamics.org/assets) is a tool for finding and exploring data assets. Currently, you can search all assets that have V2 metadata and easily click links to go to the Code Ocean data asset, metadata, and QC report. -- [smartspim dashboard](https://data.allenneuraldynamics-test.org/smartspim) diff --git a/docs/source/explore_analyze/index.md b/docs/source/explore_analyze/index.md index fdd60f0..724bd35 100644 --- a/docs/source/explore_analyze/index.md +++ b/docs/source/explore_analyze/index.md @@ -1,7 +1,3 @@ ---- -orphan: true ---- - # Explore, QC & analyze Raw assets uploaded from platforms at AIND are run through automated pipelines that produce derived assets. You can explore these assets through the [Data Portal](https://data.allenneuraldynamics.org/assets). @@ -16,9 +12,12 @@ There are also Platform dashboards for each of the major platforms in Neural Dyn | Platform | Dashboard | Internal Site | | -- | -- | -- | -| SmartSPIM | [Dashboard](https://data.allenneuraldynamics.org/smartspim) | [Internal Site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/SmartSPIM-Platform.aspx) | -| Fiber Photometry | [Dashboard](https://data.allenneuraldynamics.org/fiber_photometry) | [Internal site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/Fiber-Photometry-Platform.aspx) | +| ExaSPIM | [Dashboard](https://data.allenneuraldynamics.org/exaspim) | | | Dynamic Foraging | [Dashboard](https://data.allenneuraldynamics.org/dynamic_foraging)| | +| Dynamic Routing | [Dashboard](https://data.allenneuraldynamics.org/dynamic_routing)| | +| Fiber Photometry | [Dashboard](https://data.allenneuraldynamics.org/fiber_photometry) | [Internal site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/Fiber-Photometry-Platform.aspx) | +| SLAP2 | [Dashboard](https://data.allenneuraldynamics.org/slap2) | | +| SmartSPIM | [Dashboard](https://data.allenneuraldynamics.org/smartspim) | [Internal Site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/SmartSPIM-Platform.aspx) | | VR Foraging | [Dashboard](https://data.allenneuraldynamics.org/vr_foraging) | | ## I want to... diff --git a/docs/source/index.md b/docs/source/index.md index afe57cb..ee6e729 100644 --- a/docs/source/index.md +++ b/docs/source/index.md @@ -48,25 +48,10 @@ Follow these links to request access to: ```{toctree} :maxdepth: 1 :hidden: -:caption: Acquire, upload & process +:caption: How-to -acquire_upload/prepare_before_acquisition -acquire_upload/acquire_data -acquire_upload/calibration -acquire_upload/upload_data -acquire_upload/process_data - -``` - -```{toctree} -:maxdepth: 1 -:hidden: -:caption: Explore, QC & analyze - -explore_analyze/quality_control -explore_analyze/find_data -explore_analyze/analyze_data -explore_analyze/outreach +acquire_upload/index +explore_analyze/index ```